- gel - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.TwoDimensionalIdentificationType
-
- gelFreeIdentification - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType
-
- GelFreeIdentificationType - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
The GelFreeIdentification element (complex) is a concrete implementation of the abstract
IdentificationType element, used to hold details of identifications that have arisen from techniques
other than gel eletrophoresis, for example LC-MS/MS.
- GelFreeIdentificationType() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.GelFreeIdentificationType
-
- gelLink - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.GelType
-
- gelLocation - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.TwoDimensionalIdentificationType
-
- GelType - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
The GelType (abstract) element provides a basis for describing the kind of gel used for
this identication.
- GelType() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.GelType
-
- GENCODEFILE - Variable in class org.jbiowh.core.datasets.taxonomy.parser.TaxonomyTables
-
- GENCODETEMP - Variable in class org.jbiowh.core.datasets.taxonomy.parser.TaxonomyTables
-
- Gene - Class in org.jbiowh.core.datasets.protein.parser.xml
-
This Class handled the Gene on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Gene() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.Gene
-
This constructor initialize the WH file manager and the WH DataSet
manager
- Gene - Class in org.jbiowh.core.utility.fileformats.bioml.xml
-
- Gene() - Constructor for class org.jbiowh.core.utility.fileformats.bioml.xml.Gene
-
- Gene2Accession - Class in org.jbiowh.core.datasets.gene.gene.jpa.entities
-
This Class is the Gene2Accession entity
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-10-03 22:11:05 +0200
(Wed, 03 Oct 2012) $ $LastChangedRevision: 591 $
- Gene2Accession() - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- Gene2Accession(Gene2AccessionPK) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- Gene2Accession(long, long) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- GENE2ACCESSION - Static variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GENE2ACCESSION_HAS_PROTEIN - Static variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GENE2ACCESSIONFILE - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- Gene2AccessionParser - Class in org.jbiowh.core.datasets.gene.gene.parser.files
-
This Class is the Gene2Accession parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- Gene2AccessionParser() - Constructor for class org.jbiowh.core.datasets.gene.gene.parser.files.Gene2AccessionParser
-
- gene2AccessionPK - Variable in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- Gene2AccessionPK - Class in org.jbiowh.core.datasets.gene.gene.jpa.entities
-
This Class is the Gene2Accession PK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- Gene2AccessionPK() - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2AccessionPK
-
- Gene2AccessionPK(long, long) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2AccessionPK
-
- GENE2ACCESSIONTEMP - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- Gene2Ensembl - Class in org.jbiowh.core.datasets.gene.gene.jpa.entities
-
This Class is the Gene2Ensembl entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- Gene2Ensembl() - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Ensembl
-
- Gene2Ensembl(Long) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Ensembl
-
- Gene2Ensembl(Long, long) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Ensembl
-
- GENE2ENSEMBL - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GENE2ENSEMBLFILE - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- Gene2EnsemblParser - Class in org.jbiowh.core.datasets.gene.gene.parser.files
-
This Class is the Gene2Ensembl Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- Gene2EnsemblParser() - Constructor for class org.jbiowh.core.datasets.gene.gene.parser.files.Gene2EnsemblParser
-
- GENE2ENSEMBLTEMP - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GENE2GO - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GENE2GOFILE - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- Gene2GOParser - Class in org.jbiowh.core.datasets.gene.gene.parser.files
-
This Class is the Gene2GO Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- Gene2GOParser() - Constructor for class org.jbiowh.core.datasets.gene.gene.parser.files.Gene2GOParser
-
- GENE2GOTEMP - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- Gene2MIMParser - Class in org.jbiowh.core.datasets.gene.gene.parser.files
-
This Class is the Gene2MIM Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- Gene2MIMParser() - Constructor for class org.jbiowh.core.datasets.gene.gene.parser.files.Gene2MIMParser
-
- Gene2PMID - Class in org.jbiowh.core.datasets.gene.gene.jpa.entities
-
This Class is Gene2PMID entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- Gene2PMID() - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2PMID
-
- Gene2PMID(Gene2PMIDPK) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2PMID
-
- Gene2PMID(long, long) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2PMID
-
- GENE2PMID - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GENE2PMIDFILE - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- Gene2PMIDParser - Class in org.jbiowh.core.datasets.gene.gene.parser.files
-
This Class is the Gene2PMID Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- Gene2PMIDParser() - Constructor for class org.jbiowh.core.datasets.gene.gene.parser.files.Gene2PMIDParser
-
- gene2PMIDPK - Variable in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2PMID
-
- Gene2PMIDPK - Class in org.jbiowh.core.datasets.gene.gene.jpa.entities
-
This Class is the Gene2PMIDPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- Gene2PMIDPK() - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2PMIDPK
-
- Gene2PMIDPK(long, long) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2PMIDPK
-
- GENE2PUBMEDTEMP - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- Gene2STS - Class in org.jbiowh.core.datasets.gene.gene.jpa.entities
-
This Class is Gene2STS entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- Gene2STS() - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2STS
-
- Gene2STS(Gene2STSPK) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2STS
-
- Gene2STS(long, long) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2STS
-
- GENE2STS - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GENE2STSFILE - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- Gene2STSParser - Class in org.jbiowh.core.datasets.gene.gene.parser.files
-
This Class is the Gene2STS Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- Gene2STSParser() - Constructor for class org.jbiowh.core.datasets.gene.gene.parser.files.Gene2STSParser
-
- gene2STSPK - Variable in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2STS
-
- Gene2STSPK - Class in org.jbiowh.core.datasets.gene.gene.jpa.entities
-
This Class is the Gene2STSPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- Gene2STSPK() - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2STSPK
-
- Gene2STSPK(long, long) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2STSPK
-
- GENE2STSTEMP - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- Gene2UniGene - Class in org.jbiowh.core.datasets.gene.gene.jpa.entities
-
This Class is the Gene2UniGene entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- Gene2UniGene() - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2UniGene
-
- Gene2UniGene(Gene2UniGenePK) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2UniGene
-
- Gene2UniGene(long, String) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2UniGene
-
- GENE2UNIGENE - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GENE2UNIGENEFILE - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- Gene2UniGeneParser - Class in org.jbiowh.core.datasets.gene.gene.parser.files
-
This Class is the Gene2UniGene Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- Gene2UniGeneParser() - Constructor for class org.jbiowh.core.datasets.gene.gene.parser.files.Gene2UniGeneParser
-
- gene2UniGenePK - Variable in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2UniGene
-
- Gene2UniGenePK - Class in org.jbiowh.core.datasets.gene.gene.jpa.entities
-
This Class is the Gene2UniGenePK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- Gene2UniGenePK() - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2UniGenePK
-
- Gene2UniGenePK(long, String) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2UniGenePK
-
- GENE2UNIGENETEMP - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GENE_GROUP - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GENE_HISTORY - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GENE_INFO - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GENE_ONTOLOGY - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- GENE_REFSEQ_UNIPROTKB_COLLAB - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GeneBank - Class in org.jbiowh.core.datasets.gene.genebank.jpa.entities
-
This class is the GeneBank entity
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-07-26 09:54:20 +0200 (Fri, 26 Jul 2013) $ $LastChangedRevision: 638 $
- GeneBank() - Constructor for class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- GeneBank(Long) - Constructor for class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- GeneBank(Long, String, int, String, String, Date, int, String, int, long) - Constructor for class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- GENEBANK - Variable in class org.jbiowh.core.datasets.gene.genebank.parser.GeneBankTables
-
- GeneBankAccession - Class in org.jbiowh.core.datasets.gene.genebank.jpa.entities
-
This class is the GeneBankAccession entity
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $ $LastChangedRevision: 591 $
- GeneBankAccession() - Constructor for class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankAccession
-
- GENEBANKACCESSION - Variable in class org.jbiowh.core.datasets.gene.genebank.parser.GeneBankTables
-
- GeneBankCDS - Class in org.jbiowh.core.datasets.gene.genebank.jpa.entities
-
This class is the GeneBankCDS entity
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-05-29 11:24:54 +0200
(Wed, 29 May 2013) $ $LastChangedRevision: 638 $
- GeneBankCDS() - Constructor for class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- GeneBankCDS(Long) - Constructor for class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- GeneBankCDS(Long, int, String, long) - Constructor for class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- GENEBANKCDS - Variable in class org.jbiowh.core.datasets.gene.genebank.parser.GeneBankTables
-
- GENEBANKCDS_HAS_GENEINFO - Static variable in class org.jbiowh.core.datasets.gene.genebank.parser.GeneBankTables
-
- GeneBankCDSDBXref - Class in org.jbiowh.core.datasets.gene.genebank.jpa.entities
-
This class is the GeneBankCDSDBXref entity
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $ $LastChangedRevision: 591 $
- GeneBankCDSDBXref() - Constructor for class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDSDBXref
-
- GENEBANKCDSDBXREF - Variable in class org.jbiowh.core.datasets.gene.genebank.parser.GeneBankTables
-
- GeneBankCDSJpaController - Class in org.jbiowh.core.datasets.gene.genebank.jpa.controller
-
This class is the GeneBankCDS Jpa Controller
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $ $LastChangedRevision: 591 $
- GeneBankCDSJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.gene.genebank.jpa.controller.GeneBankCDSJpaController
-
- GENEBANKCDSTEMP - Variable in class org.jbiowh.core.datasets.gene.genebank.parser.GeneBankTables
-
- GeneBankCDSTransfer - Class in org.jbiowh.core.datasets.gene.genebank.jpa.transfer
-
This class handled the GeneBankCDS transfer process
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $ $LastChangedRevision: 591 $
- GeneBankCDSTransfer(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.gene.genebank.jpa.transfer.GeneBankCDSTransfer
-
Create the GeneBankCDS transfer
- GeneBankCDSTransfer(WHDBMSFactory) - Constructor for class org.jbiowh.core.datasets.gene.genebank.jpa.transfer.GeneBankCDSTransfer
-
Create the GeneBankCDS transfer
- GeneBankDataSetView - Class in org.jbiowh.gui.datasets.gene.genebank
-
This class handled the GeneBank View
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-07-26 09:54:20 +0200 (Fri, 26 Jul 2013) $ $LastChangedRevision: 638 $
- GeneBankDataSetView(JComponent, Object) - Constructor for class org.jbiowh.gui.datasets.gene.genebank.GeneBankDataSetView
-
Creates new form AbstractDataSetView
- GeneBankFeatures - Class in org.jbiowh.core.datasets.gene.genebank.jpa.entities
-
This class is the GeneBankFeatures entity
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $ $LastChangedRevision: 591 $
- GeneBankFeatures() - Constructor for class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankFeatures
-
- GENEBANKFEATURES - Variable in class org.jbiowh.core.datasets.gene.genebank.parser.GeneBankTables
-
- GeneBankFlatParser - Class in org.jbiowh.core.datasets.gene.genebank.parser.files
-
This class is the Genbank parser for the SEQ flat files
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-05-29 11:24:54 +0200
(Wed, 29 May 2013) $ $LastChangedRevision: 656 $
- GeneBankFlatParser() - Constructor for class org.jbiowh.core.datasets.gene.genebank.parser.files.GeneBankFlatParser
-
- GeneBankGeneLink - Class in org.jbiowh.core.datasets.gene.genebank.parser.links
-
This Class create the GeneBankCDS_has_GeneInfo relationship table
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $ $LastChangedRevision: 591 $
- GeneBankJpaController - Class in org.jbiowh.core.datasets.gene.genebank.jpa.controller
-
This class is the GeneBank Jpa Controller
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $ $LastChangedRevision: 591 $
- GeneBankJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.gene.genebank.jpa.controller.GeneBankJpaController
-
- GeneBankLinks - Class in org.jbiowh.core.datasets.gene.genebank.parser.links
-
This Class is the
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $ $LastChangedRevision: 591 $
- GeneBankListView - Class in org.jbiowh.gui.datasets.gene.genebank
-
This class show the GeneBank List
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $ $LastChangedRevision: 591 $
- GeneBankListView(Collection<GeneBank>, JComponent) - Constructor for class org.jbiowh.gui.datasets.gene.genebank.GeneBankListView
-
Create the GeneBank List object
- GeneBankOnline - Class in org.jbiowh.core.datasets.gene.genebank.parser.files
-
This class is used to retrieve GenBank data from the NCBI web site
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-06-05 15:04:58 +0200
(Wed, 05 Jun 2013) $ $LastChangedRevision: 633 $
- GeneBankOnline() - Constructor for class org.jbiowh.core.datasets.gene.genebank.parser.files.GeneBankOnline
-
- GeneBankParser - Class in org.jbiowh.core.datasets.gene.genebank.parser
-
This class is the GeneBank parser
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $ $LastChangedRevision: 591 $
- GeneBankParser() - Constructor for class org.jbiowh.core.datasets.gene.genebank.parser.GeneBankParser
-
- GeneBankTables - Class in org.jbiowh.core.datasets.gene.genebank.parser
-
This Class is the GeneBank Table list
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $ $LastChangedRevision: 591 $
- GeneBankToFasta - Class in org.jbiowh.core.datasets.gene.genebank.utils
-
This Class is the
$Author$
$LastChangedDate$
$LastChangedRevision$
- geneBankToFasta(GeneBank) - Method in class org.jbiowh.core.datasets.gene.genebank.utils.GeneBankToFasta
-
- GeneBankTransfer - Class in org.jbiowh.core.datasets.gene.genebank.jpa.transfer
-
This class handled the GeneBank transfer process
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $ $LastChangedRevision: 591 $
- GeneBankTransfer(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.gene.genebank.jpa.transfer.GeneBankTransfer
-
Create the GeneBank transfer
- GeneBankTransfer(WHDBMSFactory) - Constructor for class org.jbiowh.core.datasets.gene.genebank.jpa.transfer.GeneBankTransfer
-
Create the GeneBank transfer
- GeneBankUpdateFlatParser - Class in org.jbiowh.core.datasets.gene.genebank.parser.files
-
This class is
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $ $LastChangedRevision: 591 $
- GeneBankUpdateFlatParser() - Constructor for class org.jbiowh.core.datasets.gene.genebank.parser.files.GeneBankUpdateFlatParser
-
- GeneBankUpdateParser - Class in org.jbiowh.core.datasets.gene.genebank.parser
-
This class is
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $ $LastChangedRevision: 591 $
- GeneBankUpdateParser() - Constructor for class org.jbiowh.core.datasets.gene.genebank.parser.GeneBankUpdateParser
-
- GeneDataSetView - Class in org.jbiowh.gui.datasets.gene.gene
-
This Class handled the Gene View
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GeneDataSetView(JComponent, Object) - Constructor for class org.jbiowh.gui.datasets.gene.gene.GeneDataSetView
-
Creates new form AbstractDataSetView
- GeneGenePTTLink - Class in org.jbiowh.core.datasets.gene.genome.parser.links
-
This Class populates the GENEINFO_HAS_GENEPTT relationship table
$Author$ $LastChangedDate$ $LastChangedRevision$
- GeneGroup - Class in org.jbiowh.core.datasets.gene.gene.jpa.entities
-
This Class is the GeneGroup entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GeneGroup() - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneGroup
-
- GeneGroup(GeneGroupPK) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneGroup
-
- GeneGroup(long, String, long) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneGroup
-
- GENEGROUP - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GeneGroupParser - Class in org.jbiowh.core.datasets.gene.gene.parser.files
-
This Class is the GeneGroup Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GeneGroupParser() - Constructor for class org.jbiowh.core.datasets.gene.gene.parser.files.GeneGroupParser
-
- geneGroupPK - Variable in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneGroup
-
- GeneGroupPK - Class in org.jbiowh.core.datasets.gene.gene.jpa.entities
-
This Class is the GeneGroupPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GeneGroupPK() - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneGroupPK
-
- GeneGroupPK(long, String, long) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneGroupPK
-
- GENEHISTORY - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GeneHistoryParser - Class in org.jbiowh.core.datasets.gene.gene.parser.files
-
This Class is the GeneHistory Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GeneHistoryParser() - Constructor for class org.jbiowh.core.datasets.gene.gene.parser.files.GeneHistoryParser
-
- GENEID - Variable in class org.jbiowh.core.datasets.gene.gene.search.SearchGeneInfo
-
- GeneInfo - Class in org.jbiowh.core.datasets.gene.gene.jpa.entities
-
This Class is the GeneInfo entity
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-19 09:38:47 +0100
(Tue, 19 Mar 2013) $ $LastChangedRevision: 591 $
- GeneInfo() - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- GeneInfo(Long) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- GeneInfo(Long, long, long, long) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- GENEINFO - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GENEINFO_HAS_GENEPTT - Static variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GENEINFO_HAS_GENERNT - Static variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GENEINFO_HAS_KEGGGENE - Static variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GENEINFO_HAS_OMIM - Static variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GENEINFO_HAS_ONTOLOGY - Static variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GeneInfoDBXrefs - Class in org.jbiowh.core.datasets.gene.gene.jpa.entities
-
This Class is the GeneInfoDBXrefs entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GeneInfoDBXrefs() - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoDBXrefs
-
- GeneInfoDBXrefs(GeneInfoDBXrefsPK) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoDBXrefs
-
- GeneInfoDBXrefs(long, String, String) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoDBXrefs
-
- GENEINFODBXREFS - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- geneInfoDBXrefsPK - Variable in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoDBXrefs
-
- GeneInfoDBXrefsPK - Class in org.jbiowh.core.datasets.gene.gene.jpa.entities
-
This Class is the GeneInfoDBXrefsPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GeneInfoDBXrefsPK() - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoDBXrefsPK
-
- GeneInfoDBXrefsPK(long, String, String) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoDBXrefsPK
-
- GeneInfoJpaController - Class in org.jbiowh.core.datasets.gene.gene.jpa.controller
-
This class is the GeneInfo Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GeneInfoJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.controller.GeneInfoJpaController
-
- GeneInfoListView - Class in org.jbiowh.gui.datasets.gene.gene
-
This Class show the GeneInfo List
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GeneInfoListView(Collection<GeneInfo>, JComponent) - Constructor for class org.jbiowh.gui.datasets.gene.gene.GeneInfoListView
-
Create the GeneInfo List object
- GeneInfoParser - Class in org.jbiowh.core.datasets.gene.gene.parser.files
-
This Class is the GeneInfo parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GeneInfoParser() - Constructor for class org.jbiowh.core.datasets.gene.gene.parser.files.GeneInfoParser
-
- GeneInfoSynonyms - Class in org.jbiowh.core.datasets.gene.gene.jpa.entities
-
This Class is the GeneInfoSynonyms entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GeneInfoSynonyms() - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoSynonyms
-
- GeneInfoSynonyms(GeneInfoSynonymsPK) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoSynonyms
-
- GeneInfoSynonyms(long, String) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoSynonyms
-
- GENEINFOSYNONYMS - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- geneInfoSynonymsPK - Variable in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoSynonyms
-
- GeneInfoSynonymsPK - Class in org.jbiowh.core.datasets.gene.gene.jpa.entities
-
This Class is the GeneInfoSynonymsPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GeneInfoSynonymsPK() - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoSynonymsPK
-
- GeneInfoSynonymsPK(long, String) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoSynonymsPK
-
- GENEINFOWIDDBXREFSTEMP - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GENEINFOWIDSYNONYMSTEMP - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GeneKEGGGeneLink - Class in org.jbiowh.core.datasets.gene.gene.parser.links
-
This Class is the Gene KEGGGene link
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GeneLinks - Class in org.jbiowh.core.datasets.gene.gene.parser.links
-
This Class create all Gene external relationship tables
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GeneLocation - Class in org.jbiowh.core.datasets.protein.parser.xml
-
This Class handled the XML GeneLocation tags on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- GeneLocation() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.GeneLocation
-
This constructor initialize the WH file manager and the WH DataSet
manager
- GeneLocationTags - Class in org.jbiowh.core.datasets.protein.parser.xml.tags
-
This Class staorage the XML GeneLocation on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- GeneLocationTags() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.tags.GeneLocationTags
-
- GENELOCUSTAG - Variable in class org.jbiowh.core.datasets.gene.genome.search.SearchGenePTT
-
- GENEMAPFILE - Variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- GeneMapParser - Class in org.jbiowh.core.datasets.disease.omim.parser.files
-
This Class is the parser for the OMIM genemap file
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- GeneMapParser() - Constructor for class org.jbiowh.core.datasets.disease.omim.parser.files.GeneMapParser
-
- GeneOMIMLink - Class in org.jbiowh.core.datasets.gene.gene.parser.links
-
This Class is the Gene OMIM link
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GeneOntologyLink - Class in org.jbiowh.core.datasets.gene.gene.parser.links
-
This Class is the Gene Ontology link
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GeneParser - Class in org.jbiowh.core.datasets.gene.gene.parser
-
This Class is the Gene Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GeneParser() - Constructor for class org.jbiowh.core.datasets.gene.gene.parser.GeneParser
-
- GenePTT - Class in org.jbiowh.core.datasets.gene.genome.jpa.entities
-
This Class is the GenePTT entity
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-19 09:38:47 +0100
(Tue, 19 Mar 2013) $ $LastChangedRevision: 591 $
- GenePTT() - Constructor for class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- GenePTT(Long) - Constructor for class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- GenePTT(Long, long, long, String, String, int, String, String, String, String, String, String, long) - Constructor for class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- GENEPTT - Static variable in class org.jbiowh.core.datasets.gene.genome.parser.GenePTTTables
-
- GENEPTT_HAS_TAXONOMY - Static variable in class org.jbiowh.core.datasets.gene.genome.parser.GenePTTTables
-
- GenePTTComparator - Class in org.jbiowh.core.datasets.gene.genome.utils
-
This class is used as Comparator for Set
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-05-29 11:24:54 +0200
(Wed, 29 May 2013) $ $LastChangedRevision: 656 $
- GenePTTComparator() - Constructor for class org.jbiowh.core.datasets.gene.genome.utils.GenePTTComparator
-
- GenePTTDataSetView - Class in org.jbiowh.gui.datasets.gene.genome
-
This Class handled the Chromosome View
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-11-08 14:37:19 +0100
(Thu, 08 Nov 2012) $ $LastChangedRevision: 591 $
- GenePTTDataSetView(JComponent, Object) - Constructor for class org.jbiowh.gui.datasets.gene.genome.GenePTTDataSetView
-
Creates new form AbstractDataSetView
- GenePTTJpaController - Class in org.jbiowh.core.datasets.gene.genome.jpa.controller
-
This class is the GenePTT Jpa Controller
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-30 18:40:01 +0100
(Sat, 30 Mar 2013) $ $LastChangedRevision: 591 $
- GenePTTJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.gene.genome.jpa.controller.GenePTTJpaController
-
- GenePTTLinks - Class in org.jbiowh.core.datasets.gene.genome.parser.links
-
This Class create all GenePTT external relationship tables
$Author$ $LastChangedDate$ $LastChangedRevision$
- GenePTTListView - Class in org.jbiowh.gui.datasets.gene.genome
-
This Class show the GenePTT List
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GenePTTListView(Collection<GenePTT>, JComponent) - Constructor for class org.jbiowh.gui.datasets.gene.genome.GenePTTListView
-
Create the GenePTT List object
- GenePTTParser - Class in org.jbiowh.core.datasets.gene.genome.parser
-
This Class is the Gene PTT parser
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-02-07 09:07:45 +0100
(Thu, 07 Feb 2013) $ $LastChangedRevision: 656 $
- GenePTTParser() - Constructor for class org.jbiowh.core.datasets.gene.genome.parser.GenePTTParser
-
- GenePTTTables - Class in org.jbiowh.core.datasets.gene.genome.parser
-
This Class is the GenePTT Table list
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GENEPTTTAXONOMY - Variable in class org.jbiowh.core.datasets.gene.genome.parser.GenePTTTables
-
- GenePTTTaxonomyLink - Class in org.jbiowh.core.datasets.gene.genome.parser.links
-
This Class is populates the GENEPTT_HAS_TAXONOMY relationship table
$Author$
$LastChangedDate$
$LastChangedRevision$
- GenePTTTransfer - Class in org.jbiowh.core.datasets.gene.genome.jpa.transfer
-
This class handled the GenePTT transfer process
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GenePTTTransfer(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.gene.genome.jpa.transfer.GenePTTTransfer
-
Create the GenePTT transfer
- GenePTTTransfer(WHDBMSFactory) - Constructor for class org.jbiowh.core.datasets.gene.genome.jpa.transfer.GenePTTTransfer
-
Create the GenePTT transfer
- GENERALREFERENCES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugTags
-
- GeneRefSeqUniprot - Class in org.jbiowh.core.datasets.gene.gene.jpa.entities
-
This Class is the GeneRefSeqUniprot entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GeneRefSeqUniprot() - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneRefSeqUniprot
-
- GeneRefSeqUniprot(GeneRefSeqUniprotPK) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneRefSeqUniprot
-
- GeneRefSeqUniprot(GeneRefSeqUniprotPK, long) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneRefSeqUniprot
-
- GeneRefSeqUniprot(String, String) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneRefSeqUniprot
-
- GENEREFSEQUNIPROT - Variable in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
- GeneRefseqUniProtParser - Class in org.jbiowh.core.datasets.gene.gene.parser.files
-
This Class is GeneRefseqUniProt Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GeneRefseqUniProtParser() - Constructor for class org.jbiowh.core.datasets.gene.gene.parser.files.GeneRefseqUniProtParser
-
- geneRefSeqUniprotPK - Variable in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneRefSeqUniprot
-
- GeneRefSeqUniprotPK - Class in org.jbiowh.core.datasets.gene.gene.jpa.entities
-
This Class is the GeneRefSeqUniprotPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GeneRefSeqUniprotPK() - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneRefSeqUniprotPK
-
- GeneRefSeqUniprotPK(String, String) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneRefSeqUniprotPK
-
- GENERIC - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ManufacturersTags
-
- genericType(Class, String) - Method in class org.jbiowh.core.utility.jparelationship.JpaRelationship
-
Return a map with the external relationship fields and its class for a
JBioWH entity
- GeneRNT - Class in org.jbiowh.core.datasets.gene.genome.jpa.entities
-
This class is the GeneRNT entity
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $ $LastChangedRevision: 591 $
- GeneRNT() - Constructor for class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- GeneRNT(Long) - Constructor for class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- GeneRNT(Long, long, long, String, String, int, long, String, String, long) - Constructor for class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- GENERNT - Static variable in class org.jbiowh.core.datasets.gene.genome.parser.GenePTTTables
-
- GENERNT_HAS_TAXONOMY - Static variable in class org.jbiowh.core.datasets.gene.genome.parser.GenePTTTables
-
- GeneRNTJpaController - Class in org.jbiowh.core.datasets.gene.genome.jpa.controller
-
This class is the GeneRNT Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GeneRNTJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.gene.genome.jpa.controller.GeneRNTJpaController
-
- GeneRNTTransfer - Class in org.jbiowh.core.datasets.gene.genome.jpa.transfer
-
This Class handled the GeneRNT transfer process
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $ $LastChangedRevision: 591 $
- GeneRNTTransfer(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.gene.genome.jpa.transfer.GeneRNTTransfer
-
Create the GeneRNT transfer
- GeneRNTTransfer(WHDBMSFactory) - Constructor for class org.jbiowh.core.datasets.gene.genome.jpa.transfer.GeneRNTTransfer
-
Create the GeneRNT transfer
- GENES - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- GenesDrugsFromTaxonomyFamily - Class in org.jbiowh.tools.gene
-
This class identify genes encoding for drug target proteins and creating the
drug list from a Taxonomy TaxId
$Author$ $LastChangedDate$ $LastChangedRevision$
- GenesDrugsFromTaxonomyFamily() - Constructor for class org.jbiowh.tools.gene.GenesDrugsFromTaxonomyFamily
-
- genesDrugsFromTaxonomyFamily() - Method in class org.jbiowh.tools.gene.GenesDrugsFromTaxonomyFamily
-
Find genes in a same chromosome distant from a number of pair bases that
encoding drugs target proteins
- GENESYMBOL - Variable in class org.jbiowh.core.datasets.gene.genome.search.SearchGenePTT
-
- GeneTables - Class in org.jbiowh.core.datasets.gene.gene.parser
-
This Class is the Gene Table list
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GeneTags - Class in org.jbiowh.core.datasets.protein.parser.xml.tags
-
This Class storage the XML tags for gene on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- GeneTags() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.tags.GeneTags
-
- GeneTransfer - Class in org.jbiowh.core.datasets.gene.gene.jpa.transfer
-
This class handled the GeneInfo transfer process
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- GeneTransfer(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.transfer.GeneTransfer
-
Create the GeneInfo transfer
- GeneTransfer(WHDBMSFactory) - Constructor for class org.jbiowh.core.datasets.gene.gene.jpa.transfer.GeneTransfer
-
Create the GeneInfo transfer
- GenomeDataFromTaxGraph - Class in org.jbiowh.tools.gene
-
This class is
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $ $LastChangedRevision: 591 $
- GenomeDataFromTaxGraph() - Constructor for class org.jbiowh.tools.gene.GenomeDataFromTaxGraph
-
- getAa() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- getAa() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Peptide
-
- getAbbreviation() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- getAbsorption() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getAbstract1() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamInterpro
-
- getAcc() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- getACC() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the ACC Tags
- getAccession() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankAccession
-
- getACCESSION() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EntryTags
-
- getAccession() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.CvParamType
-
Gets the value of the accession property.
- getAccession() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
Gets the value of the accession property.
- getAccessionNumber() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSecondAccessionNumbers
-
- getAccessionNumber() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumberPK
-
- getAccessionNumber() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.MzData
-
Gets the value of the accessionNumber property.
- getAccessionVersion() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
Gets the value of the accessionVersion property.
- getAcqNumber() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType.AcqSpecification.Acquisition
-
Gets the value of the acqNumber property.
- getAcqSpecification() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType
-
Gets the value of the acqSpecification property.
- getAcquisition() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType.AcqSpecification
-
Gets the value of the acquisition property.
- getAct() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- getAction() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersActions
-
- getAction() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesActions
-
- getAction() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsActions
-
- getAction() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersActions
-
- getAction() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Form
-
Gets the value of the action property.
- getActivation() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PrecursorType
-
Gets the value of the activation property.
- getAdditional() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType
-
Gets the value of the additional property.
- getAdditional() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.GelType
-
Gets the value of the additional property.
- getAdditional() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
Gets the value of the additional property.
- getAdditional() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.InstrumentDescriptionType
-
Gets the value of the additional property.
- getAdditional() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Modification
-
Gets the value of the additional property.
- getAdditional() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Peptide
-
Gets the value of the additional property.
- getAdditional() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ReferenceType
-
Gets the value of the additional property.
- getAddress() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.CvLookupType
-
Gets the value of the address property.
- getAdmin() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.MzData.Description
-
Gets the value of the admin property.
- getAffectedOrganisms() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAffectedOrganisms
-
- getAHFSCodes() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAHFSCodes
-
- getAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getALIASFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.NamesTags
-
- getAliEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getAliEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getAliStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getAliStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getALLERGENNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getAllSQL() - Method in class org.jbiowh.gui.component.panel.sql.SQLEditorPanel
-
Get all SQL sentences
- getAlt() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Product
-
Gets the value of the alt property.
- getAlt() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Substrate
-
Gets the value of the alt property.
- getALTERNATIVENAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getAltId() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeIdPK
-
- getALTID() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the ALTID Tags
- getAnalyzer() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.InstrumentDescriptionType.AnalyzerList
-
Gets the value of the analyzer property.
- getAnalyzerList() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.InstrumentDescriptionType
-
Gets the value of the analyzerList property.
- getApplication() - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Get the the DataSet's application name
- getApplicationVersion() - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Get the DataSet's application version
- getApproved() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- getArchitecture() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- getArchitectureAcc() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- getArrayName() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDataBinaryType
-
Gets the value of the arrayName property.
- getArrayName() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDataType
-
Gets the value of the arrayName property.
- getAssembly() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- getAt() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aa
-
Gets the value of the at property.
- getAt() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aconflict
-
Gets the value of the at property.
- getAt() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Alink
-
Gets the value of the at property.
- getAt() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Amod
-
Gets the value of the at property.
- getAt() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Avariant
-
Gets the value of the at property.
- getAt() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Da
-
Gets the value of the at property.
- getAt() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dmod
-
Gets the value of the at property.
- getAt() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dstart
-
Gets the value of the at property.
- getAt() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dstop
-
Gets the value of the at property.
- getAt() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dvariant
-
Gets the value of the at property.
- getAt() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ra
-
Gets the value of the at property.
- getAt() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rmod
-
Gets the value of the at property.
- getAt() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rstart
-
Gets the value of the at property.
- getAt() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rstop
-
Gets the value of the at property.
- getAt() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rvariant
-
Gets the value of the at property.
- getATCCode() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankATCCodes
-
- getAttribType() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferencePropertyPK
-
- getAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getATTRIBUTEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.AttributeListTags
-
- getATTRIBUTELISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.AttributeListTags
-
- getAttribValue() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferenceProperty
-
- getAuthor() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getAuthor() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- getAuthor() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeedPK
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegionsPK
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqDisulphide
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProteinPK
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasUniProtId
-
- getAv() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMAV
-
- getAvailability() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailabilityPK
-
- getAVAILABILITYFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.AvailabilityTags
-
- getAVAILABILITYLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.AvailabilityListTags
-
- getAvailabilityRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getAVAILABILITYREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractionTags
-
- getAverageCoverage() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getAverageLength() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getB_ions() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- getB_score() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- getBase() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getBASEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterTags
-
- getBasicData() - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the basic data to show
- getBasicData() - Method in class org.jbiowh.gui.datasets.disease.OMIMDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.domain.pfam.PFamDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.drug.DrugBankDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.gene.gene.GeneDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.gene.genebank.GeneBankDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.gene.genome.GenePTTDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.ontology.OntologyDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.pathway.compound.KEGGCompoundDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.pathway.enzyme.KEGGEnzymeDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.pathway.gene.KEGGGeneDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.pathway.glycan.KEGGGlycanDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.pathway.KEGGPathwayDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.pathway.reaction.KEGGReactionDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.protein.ProteinDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.protfam.ProtFamDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.taxonomy.TaxonomyDataSetView
-
- getBEGINFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureRangeTags
-
- getBEGINFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.LocationTags
-
- getBeginIntervalBegin() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getBeginIntervalEnd() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getBEGININTERVALFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureRangeTags
-
- getBeginPos() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- getBeginPosition() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getBeginStatus() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- getbGColor() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getBGColor() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getBgcolor() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Gets the value of the bgcolor property.
- getBIBREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.BibrefTags
-
- getBIOLOGICALROLEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- getBIOTECHNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getBiotransformation() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getBondEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqDisulphide
-
- getBondStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqDisulphide
-
- getBoolean() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDataType
-
Gets the value of the boolean property.
- getBottomFixedCount() - Method in class org.jbiowh.gui.component.popup.MenuScroller
-
Returns the number of items fixed at the bottom of the menu or popup
menu.
- getBrand() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankBrands
-
- getBuildMethod() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getcASNumber() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getCASNumber() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getCategory() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCategories
-
- getCd() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCDPK
-
- getCDANTIGENNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getCellToEdgeMap() - Method in class org.jbiowh.core.utility.graph.JGraphXAdapter
-
Return a map with the mxCell and edge map
- getCellToVertexMap() - Method in class org.jbiowh.core.utility.graph.JGraphXAdapter
-
Return a map with the mxCell and vertex map
- getCELLTYPEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.BioSourceTypeTags
-
- getChain() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- getChain() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getChain() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- getChangeDate() - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Get the DataSet's change date
- getChangeStatus() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getChecksum() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getChecksum() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- getCHECKSUMFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SequenceTags
-
- getChromosome() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getCigar() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getCigar() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getCigar() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- getCite() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- getCite() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- getCite() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- getCite() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- getCite() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- getCitId() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyUnParseCitation
-
- getCitKey() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyUnParseCitation
-
- getClanAcc() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getClanAuthor() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getClanComment() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getClanDescription() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getClanId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getClass1() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- getClass1() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeClass
-
- getClass1() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanClass
-
- getClearance() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getCn() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCNPK
-
- getCode() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- getCode() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- getCode() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyDivision
-
- getCode() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- getCog() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- getCog() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- getCollection() - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Get the collection
- getCollectionColumns(T) - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Return the field to be visualized from the collection
- getCollectionColumns(OMIM) - Method in class org.jbiowh.gui.datasets.disease.OMIMListView
-
- getCollectionColumns(PfamAbioWH) - Method in class org.jbiowh.gui.datasets.domain.pfam.PFamListView
-
- getCollectionColumns(DrugBank) - Method in class org.jbiowh.gui.datasets.drug.DrugBankListView
-
- getCollectionColumns(GeneInfo) - Method in class org.jbiowh.gui.datasets.gene.gene.GeneInfoListView
-
- getCollectionColumns(GeneBank) - Method in class org.jbiowh.gui.datasets.gene.genebank.GeneBankListView
-
- getCollectionColumns(GenePTT) - Method in class org.jbiowh.gui.datasets.gene.genome.GenePTTListView
-
- getCollectionColumns(Ontology) - Method in class org.jbiowh.gui.datasets.ontology.OntologyListView
-
- getCollectionColumns(KEGGCompound) - Method in class org.jbiowh.gui.datasets.pathway.compound.KEGGCompoundListView
-
- getCollectionColumns(KEGGEnzyme) - Method in class org.jbiowh.gui.datasets.pathway.enzyme.KEGGEnzymeListView
-
- getCollectionColumns(KEGGGene) - Method in class org.jbiowh.gui.datasets.pathway.gene.KEGGGeneListView
-
- getCollectionColumns(KEGGGlycan) - Method in class org.jbiowh.gui.datasets.pathway.glycan.KEGGGlycanListView
-
- getCollectionColumns(KEGGPathway) - Method in class org.jbiowh.gui.datasets.pathway.KEGGPathwayListView
-
- getCollectionColumns(KEGGReaction) - Method in class org.jbiowh.gui.datasets.pathway.reaction.KEGGReactionListView
-
- getCollectionColumns(Protein) - Method in class org.jbiowh.gui.datasets.protein.ProteinListView
-
- getCollectionColumns(UniRefEntry) - Method in class org.jbiowh.gui.datasets.protfam.UniRefEntryListView
-
- getCollectionColumns(Taxonomy) - Method in class org.jbiowh.gui.datasets.taxonomy.TaxonomyListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Get the collection element from the table row
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.disease.OMIMListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.domain.pfam.PFamListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.drug.DrugBankListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.gene.gene.GeneInfoListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.gene.genebank.GeneBankListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.gene.genome.GenePTTListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.ontology.OntologyListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.pathway.compound.KEGGCompoundListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.pathway.enzyme.KEGGEnzymeListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.pathway.gene.KEGGGeneListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.pathway.glycan.KEGGGlycanListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.pathway.KEGGPathwayListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.pathway.reaction.KEGGReactionListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.protein.ProteinListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.protfam.UniRefEntryListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.taxonomy.TaxonomyListView
-
- getColumn(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumns
-
Return the column from its key in the handler
- getColumn(int) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumns
-
Return the column from its number in the handler
- getColumnClass(int) - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
- getColumnCount() - Method in class org.jbiowh.core.dbms.sql.SQLTableColumns
-
Return the number of columns in the table
- getColumnCount() - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
- getColumnKey(SQLTableColumn) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumns
-
Return the columns key in the handler.
- getColumnKey(int) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumns
-
Return the columns key in the handler.
- getColumnName(int) - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
- getColumns() - Method in class org.jbiowh.core.dbms.sql.SQLTable
-
Return the table's columns
- getColumns() - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Return the index's columns
- getColumns() - Method in class org.jbiowh.gui.component.table.model.CreateTableColumnModel
-
Return the column's handler
- getColumnSet() - Method in class org.jbiowh.core.dbms.sql.SQLTableColumns
-
Return a list of the columns sorted by its internal number
- getComment() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getComment() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- getComment() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- getComment() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- getComment() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- getComment() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getCOMMENT() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the COMMENT Tags
- getComment() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getComment() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getComment() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getComment() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getComment() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyDivision
-
- getComment() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.DescriptionType
-
Gets the value of the comment property.
- getCOMMENTFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getComments() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getComments() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SoftwareType
-
Gets the value of the comments property.
- getComments() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumDescType
-
Gets the value of the comments property.
- getCOMMENTTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getComp() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Gene
-
Gets the value of the comp property.
- getComp() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Protein
-
Gets the value of the comp property.
- getComp() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Subunit
-
Gets the value of the comp property.
- getCOMPARTMENTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.BioSourceTypeTags
-
- getCompeted() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getCompletionTime() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SoftwareType
-
Gets the value of the completionTime property.
- getComponent() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Gets the value of the component property.
- getComponent() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- getCOMPONENTFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getComposition() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getCONFIDENCEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ConfidenceTags
-
- getCONFIDENCELISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ConfidenceListTags
-
- getCONFLICTFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ConflictTags
-
- getConn() - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Return the MySQL connection
- getConn() - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Return the MySQL connection
- getCONSIDER() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the CONSIDER Tags
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.disease.omim.search.SearchOMIM
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.domain.pfam.search.SearchPFam
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.drug.drugbank.search.SearchDrugBank
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.gene.gene.search.SearchGeneInfo
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.gene.genebank.search.SearchGeneBank
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.gene.genome.search.SearchGenePTT
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.ontology.search.SearchOntology
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGCompound
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGlycan
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGPathway
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGReaction
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.protclust.search.SearchUniRef
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.protein.search.SearchProtein
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.taxonomy.search.SearchTaxonomy
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Get the constrain field definition on the entity
- getConstrainObject(int) - Method in class org.jbiowh.core.utility.constrains.JPLConstrains
-
- getConstrains() - Method in class org.jbiowh.core.utility.constrains.JPLConstrains
-
Get the constrains
- getConstrains() - Method in class org.jbiowh.gui.component.panel.ConstrainPanel
-
- getConstrains() - Method in class org.jbiowh.gui.component.table.model.ConstrainsTableModel
-
- getContact() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.AdminType
-
Gets the value of the contact property.
- getContactInfo() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PersonType
-
Gets the value of the contactInfo property.
- getContents() - Method in class org.jbiowh.gui.component.table.model.CreateTableModel
-
Return the SQLTable object
- getContents() - Method in class org.jbiowh.gui.component.table.model.ExtendedListTableModel
-
Get the extended data
- getContents() - Method in class org.jbiowh.gui.component.table.model.ListTableModel
-
Return the data object
- getContentsData(int) - Method in class org.jbiowh.gui.component.table.model.ExtendedListTableModel
-
Get the ExtendedModelData data in the column in a List form
- getController() - Method in class org.jbiowh.core.datasets.taxonomy.utils.TaxonomyGraph
-
- getController(Class) - Method in class org.jbiowh.core.utility.controller.AbstractController
-
Get the JPA controller and check is it is created or not
- getCoord() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getCoords() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Gets the value of the coords property.
- getCost() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- getCount() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- getCount() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.MzData.SpectrumList
-
Gets the value of the count property.
- getCount() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.InstrumentDescriptionType.AnalyzerList
-
Gets the value of the count property.
- getCount() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumDescType.PrecursorList
-
Gets the value of the count property.
- getCount() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType.AcqSpecification
-
Gets the value of the count property.
- getCountry() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- getCreated() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getCreated() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getCreated() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getCreated() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getCREATED() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EntryTags
-
- getCs() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- getCurrency() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- getCurrent() - Method in class org.jbiowh.core.datasets.gene.genome.utils.Chromosome
-
Get the current gene on the chromosome list
- getCurrentSQLLine() - Method in class org.jbiowh.gui.component.panel.sql.SQLEditorPanel
-
Get the current SQL line
- getCvLabel() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.CvLookupType
-
Gets the value of the cvLabel property.
- getCvLabel() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.CvParamType
-
Gets the value of the cvLabel property.
- getCvLookup() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.MzData
-
Gets the value of the cvLookup property.
- getCvParamOrUserParam() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ParamType
-
Gets the value of the cvParamOrUserParam property.
- getCytogLoc() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getCytogLog() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- getData() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCSData
-
- getData() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- getData() - Method in class org.jbiowh.core.datasets.protein.parser.xml.EvidencedStringType
-
- getData() - Method in class org.jbiowh.core.utility.fileformats.fasta.FastaReader
-
Get the fasta list
- getData() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PeakListBinaryType
-
Gets the value of the data property.
- getData() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDataBinaryType
-
Gets the value of the data property.
- getData() - Method in class org.jbiowh.gui.component.table.model.data.ExtendedModelData
-
Get the data list
- getDataAt(int) - Method in class org.jbiowh.gui.component.table.model.ConstrainsTableModel
-
- getDataAt(int, int) - Method in class org.jbiowh.gui.component.table.model.ExtendedListTableModel
-
Get the data at selected position
- getDatabase() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
Gets the value of the database property.
- getDatabaseVersion() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
Gets the value of the databaseVersion property.
- getDataProcessing() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.MzData.Description
-
Gets the value of the dataProcessing property.
- getDataSet() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getDataSet() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getDataSet() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDataSet() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getDataSet() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- getDataSet() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- getDataSet() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- getDataset() - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Return the DataSet object loaded
- getDataSet() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getDataSet() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getDataSet() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- getDataSet() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getDataSet() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getDataSet() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getDataSet() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getDataSet() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getDataSet() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- getDataSet() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- getDataSet() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getDATASET() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EntryTags
-
- getDataSet() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getDataSetCount() - Method in class org.jbiowh.core.datasets.mainloader.controller.DataSetJpaController
-
Count all DataSet entities objects
- getDataSetIn() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getDataSetObject() - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the DataSet Object View
- getDataSetReport() - Method in class org.jbiowh.tools.dataset.DataSetReport
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneRefSeqUniprot
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getDate() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- getDay() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getDb() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLinkPK
-
- getDb() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLinkPK
-
- getDb() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLinkPK
-
- getDb() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLinkPK
-
- getDb() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getDb() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getDb() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getDb() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getDb() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getdBAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getDBAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getdBAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getDBAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getdBAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getDBAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getdBAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getDBAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getdBAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getDBAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getDBACFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.XrefTags
-
- getDBFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.XrefTags
-
- getDbId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- getDbId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- getdBIdent() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDSDBXref
-
- getDbLink() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- getDbLink() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- getDBMSDataTypes() - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Return a list of all the data types supported by this database
- getDBMSDataTypes() - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Return a list of all the data types supported by this database
- getDBMSIndexTypes() - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Return a array of all the index types supported by this database
- getDBMSIndexTypes() - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Return a array of all the index types supported by this database
- getDBName() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoDBXrefsPK
-
- getDBName() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- getDBNAME() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the DBNAME Tags
- getDBREFERENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.DBReferenceTags
-
- getDBREFERENCETYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.DBReferenceTags
-
- getdBXref() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDSDBXref
-
- getDBXREF() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the DBXREF Tags
- getDef() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getDEF() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the DEF Tags
- getDef() - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Return the column's default value
- getDefinition() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- getDefinition() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getDefinition() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getDEFSTR() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the DEFSTR Tags
- getDelta() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- getDepositedBy() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getDepositedBy() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getDescription() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getDescription() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDescription() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractions
-
- getDescription() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- getDescription() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getDescription() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- getDescription() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.MzData
-
Gets the value of the description property.
- getDESCRIPTIONFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.FeatureTags
-
- getDetector() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.InstrumentDescriptionType
-
Gets the value of the detector property.
- getDirectory() - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Return the data source directory
- getDisease() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- getDisorder() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- getDisplayed() - Method in class org.jbiowh.gui.component.table.model.data.ExtendedModelData
-
Get the displayed list
- getDivision() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- getDivision() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getDomain() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- getDomain() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Peptide
-
- getDomainBitsScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getDomainBitsScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getDomainBitsScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getDomainEvalueScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getDomainEvalueScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getDomainEvalueScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getDOMAINFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getDomainGA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getDomainNC() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getDomainOder() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getDomainOrder() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getDomainScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- getDomainTC() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getDouble() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDataType
-
Gets the value of the double property.
- getDriver() - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Return the MySQL JAVA driver
- getDriver() - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Return the MySQL JAVA driver
- getDrug() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractionsPK
-
- getDrug() - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Drugs
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAffectedOrganisms
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAHFSCodes
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankATCCodes
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankBrands
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCategories
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractions
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankFoodInteractions
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGroup
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSecondAccessionNumbers
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSynonyms
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomy
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getDrugBankAffectedOrganisms() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankAHFSCodes() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankAsCarriers() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getDrugBankAsEnzyme() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getDrugBankAsTransporters() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getDrugBankATCCodes() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankBrands() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankCalculatedProperties() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankCarriers() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankCarriers() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersActions
-
- getDrugBankCarriers() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- getDrugBankCarriersActions() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- getDrugBankCarriersRef() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- getDrugBankCarriersWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersActions
-
- getDrugBankCarriersWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- getDrugBankCategories() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankCount() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.controller.DrugBankJpaController
-
- getDrugBankDosages() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankDrugInteractions() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankDrugInteractionsPK() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractions
-
- getDrugBankEnzymes() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankEnzymes() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesActions
-
- getDrugBankEnzymes() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- getDrugBankEnzymesActions() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- getDrugBankEnzymesRef() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- getDrugBankEnzymesWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesActions
-
- getDrugBankEnzymesWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- getDrugBankExperimentalProperties() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankExternalIdentifiers() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankExternalLinks() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankFoodInteractions() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankGeneralRef() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankGroup() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankLink(boolean, Collection<DrugBank>) - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the DrugBank action
- getDrugBankManufacturers() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankMixtures() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankPackagers() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankPatents() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankPrices() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankProteinSequences() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBanks() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getDrugBankSecondAccessionNumbers() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankSynonyms() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankTargets() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankTargets() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsActions
-
- getDrugBankTargets() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- getDrugBankTargetsActions() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- getDrugBankTargetsRef() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- getDrugBankTargetsWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsActions
-
- getDrugBankTargetsWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- getDrugBankTaxonomy() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankTaxonomySubstructures() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankTransporters() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankTransporters() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersActions
-
- getDrugBankTransporters() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- getDrugBankTransportersActions() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- getDrugBankTransportersRef() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- getDrugBankTransportersWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersActions
-
- getDrugBankTransportersWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAffectedOrganisms
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAHFSCodes
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankATCCodes
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankBrands
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractionsPK
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankFoodInteractions
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGroup
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSecondAccessionNumbers
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSynonyms
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomy
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- getDsspCode() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getEd() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMEDPK
-
- getEdgeToCellMap() - Method in class org.jbiowh.core.utility.graph.JGraphXAdapter
-
Return a map with the edges and mxCell
- getEdit() - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
Return the default edit array for each column
- getEditCell() - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
Return the edit matrix for all the cells
- getEditorComponent() - Method in class org.jbiowh.gui.sqltables.listener.DataTypeComboBoxEditor
-
- getElement() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- geteMBLCode() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getEnd() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
Gets the value of the end property.
- getEnd() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dna
-
Gets the value of the end property.
- getEnd() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Domain
-
Gets the value of the end property.
- getEnd() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Exon
-
Gets the value of the end property.
- getEnd() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Gene
-
Gets the value of the end property.
- getEnd() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Intron
-
Gets the value of the end property.
- getEnd() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Locus
-
Gets the value of the end property.
- getEnd() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Peptide
-
Gets the value of the end property.
- getEnd() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Promotor
-
Gets the value of the end property.
- getEnd() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rdomain
-
Gets the value of the end property.
- getEnd() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rna
-
Gets the value of the end property.
- getEnd() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.StsDomain
-
Gets the value of the end property.
- getEnd() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Peptide
-
Gets the value of the end property.
- getENDFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureRangeTags
-
- getENDFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.LocationTags
-
- getEndFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getEndian() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PeakListBinaryType.Data
-
Gets the value of the endian property.
- getEndIntervalBegin() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getEndIntervalEnd() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getENDINTERVALFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureRangeTags
-
- getEndPos() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- getEndPosition() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getEndPositionOnTheGenomicAccession() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- getEndShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getEndStatus() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- getENDSTATUSFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureRangeTags
-
- getEngine() - Method in class org.jbiowh.core.dbms.sql.SQLTable
-
Return the table's engine
- getEnsemblGeneIdentifier() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Ensembl
-
- getEnsemblProteinIdentifier() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Ensembl
-
- getEnsemblRNAIdentifier() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Ensembl
-
- getEntities() - Method in class org.jbiowh.core.utility.jparelationship.JpaEntitiesSelected
-
Return the list of entities to be inserted on the JBioWH copy process
- getEntityManager() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.controller.OMIMJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamAbioWHJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamArchitectureJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamARegFullInsignificantJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamARegFullSignificantJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamBbioWHJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamClansJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamCompleteProteomesJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamLiteratureReferencesJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamProteomeRegionsJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.controller.DrugBankJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.controller.GeneInfoJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.controller.GeneBankCDSJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.controller.GeneBankJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.controller.GenePTTJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.controller.GeneRNTJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.mainloader.controller.DataSetJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.mainloader.controller.WidTableJpaController
-
Get the EntityManagerFactory
- getEntityManager() - Method in class org.jbiowh.core.datasets.ontology.jpa.controller.OntologyJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.ontology.jpa.controller.OntologySynonymJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGCompoundJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGEnzymeJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGGeneJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGGlycanJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGPathwayJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGReactionJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGRPairJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryExperimentJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryInteractionJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryInteractorJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySetEntryJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySetJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySourceJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFInteractionParticipantJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFOtherBioSourceTypeJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.protclust.jpa.controller.UniRefEntryJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.protclust.jpa.controller.UniRefMemberJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.protein.jpa.controller.ProteinJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.protein.jpa.controller.ProteinKeywordJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.controller.TaxonomyJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.utility.controller.AbstractJpaController
-
This method return the Persistence EntityManager
- getEntries() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTarget
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthologyPK
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthologyPK
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Gets the value of the entry property.
- getENTRY() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EntryTags
-
- getEntry() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Uniprot
-
- getEntry() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.DbEntry
-
Gets the value of the entry property.
- getEntry1() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Relation
-
Gets the value of the entry1 property.
- getEntry2() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Relation
-
Gets the value of the entry2 property.
- getEntryByGi(Integer) - Method in class org.jbiowh.core.datasets.gene.genebank.parser.files.GeneBankOnline
-
Retrieve a Nucleotide entry from the NCBI
- getEntryByGi(String) - Method in class org.jbiowh.core.datasets.gene.genebank.parser.files.GeneBankOnline
-
Retrieve a Nucleotide entry from the NCBI
- getEntryByGi(List<Integer>) - Method in class org.jbiowh.core.datasets.gene.genebank.parser.files.GeneBankOnline
-
Retrieve a list of Nucleotide entry from the NCBI.
- getENTRYFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.EntryTags
-
- getEntrySet() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.MIF25
-
- getENTRYSETFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.EntrySetTags
-
- getEquation() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getError() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getERRORFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getEVENTFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getEventType() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEventPK
-
- getEvidence() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getEvidence() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- getEvidence() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- getEvidence() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- getEvidence() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- getEvidence() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformName
-
- getEvidence() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- getEvidence() - Method in class org.jbiowh.core.datasets.protein.parser.xml.EvidencedStringType
-
- getEVIDENCE() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EvidencedStringTypeTags
-
- getEVIDENCE() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.GeneTags
-
- getEVIDENCEDSTRINGTYPE() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EvidencedStringTypeTags
-
- getEVIDENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getEVIDENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.DBReferenceTags
-
- getEVIDENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.FeatureTags
-
- getEVIDENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.IsoformTags
-
- getEVIDENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.KeywordTags
-
- getExistence() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getExpect() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- getExpect() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- getExpect() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Protein
-
- getExperiment() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ProjectList
-
Gets the value of the experiment property.
- getExperimentAccession() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType
-
Gets the value of the experimentAccession property.
- getEXPERIMENTALINTERACTORFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentalInteractorTags
-
- getEXPERIMENTALINTERACTORLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentalInteractorListTags
-
- getEXPERIMENTALPREPARATIONFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- getEXPERIMENTALPREPARATIONLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- getEXPERIMENTALROLEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- getEXPERIMENTALROLELISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- getEXPERIMENTDESCRIPTIONFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentDescriptionTags
-
- getEXPERIMENTLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentListTags
-
- getExperimentRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRefPK
-
- getExperimentRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getEXPERIMENTREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentListTags
-
- getEXPERIMENTREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentRefListTags
-
- getEXPERIMENTREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterTags
-
- getEXPERIMENTREFLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentRefListTags
-
- getExperiments() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getEXPERIMENTSFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getExpires() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- getExponent() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getEXPONENTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterTags
-
- getExtOperation() - Method in class org.jbiowh.core.utility.constrains.JPLConstrains
-
Get the operation between constrains
- getFactor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getFACTORFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterTags
-
- getFasta(Object) - Method in class org.jbiowh.core.datasets.protein.utils.ProteinToFasta
-
Verify if the object is a Protein entity and return the Fasta format for
this protein
- getFastaFormat() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getFastaFromCollection(Collection) - Method in class org.jbiowh.core.datasets.protein.utils.ProteinToFasta
-
Get a list with all fields to be printed from a Dataset collection
- getFEATUREDETECTIONMETHODFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentDescriptionTags
-
- getFEATUREDETECTIONMETHODFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureTags
-
- getFEATUREFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureTags
-
- getFEATUREFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.FeatureTags
-
- getFEATURELISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureListTags
-
- getFEATURERANGEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureRangeTags
-
- getFEATURERANGELISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureRangeListTags
-
- getFEATURETYPEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureTags
-
- getfGColor() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getFGColor() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getFgcolor() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Gets the value of the fgcolor property.
- getfI() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.disease.omim.search.SearchOMIM
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.domain.pfam.search.SearchPFam
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.drug.drugbank.search.SearchDrugBank
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.gene.gene.search.SearchGeneInfo
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.gene.genebank.search.SearchGeneBank
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.gene.genome.search.SearchGenePTT
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.ontology.search.SearchOntology
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGCompound
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGlycan
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGPathway
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGReaction
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.protclust.search.SearchUniRef
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.protein.search.SearchProtein
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.taxonomy.search.SearchTaxonomy
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Get the SQL syntax to put after WHERE
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.disease.omim.search.SearchOMIM
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.domain.pfam.search.SearchPFam
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.drug.drugbank.search.SearchDrugBank
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.gene.gene.search.SearchGeneInfo
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.gene.genebank.search.SearchGeneBank
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.gene.genome.search.SearchGenePTT
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.ontology.search.SearchOntology
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGCompound
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGlycan
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGPathway
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGReaction
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.protclust.search.SearchUniRef
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.protein.search.SearchProtein
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.taxonomy.search.SearchTaxonomy
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Get the SQL syntax to put before WHERE
- getFieldId() - Method in class org.jbiowh.core.datasets.gene.genome.search.SearchGenePTT
-
- getFieldId() - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Get the field that will be used as Id on queries
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.disease.omim.search.SearchOMIM
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.domain.pfam.search.SearchPFam
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.drug.drugbank.search.SearchDrugBank
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.gene.gene.search.SearchGeneInfo
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.gene.genebank.search.SearchGeneBank
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.gene.genome.search.SearchGenePTT
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.ontology.search.SearchOntology
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGCompound
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGlycan
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGPathway
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGReaction
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.protclust.search.SearchUniRef
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.protein.search.SearchProtein
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.taxonomy.search.SearchTaxonomy
-
- getFieldOnEntity() - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Get the field definition on the entity
- getFields() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserEntry
-
Return a Set Object with the field tags used by the Entry
- getFields() - Method in interface org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFactory
-
- getFields() - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Get the available search fields
- getFieldsSet() - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Get the available search fields
- getFieldValue() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserEntry
-
Return the field HashMap where the Entry data is storage
- getFieldValue() - Method in interface org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFactory
-
- getFileAbsolutName(String) - Method in class org.jbiowh.core.utility.utils.ParseFiles
-
Get the file name with full path from a File name.
- getFileExtensions(Object) - Method in class org.jbiowh.gui.datasets.EntityParserFieldProxy
-
Get the available file extension to each kind of Dataset
- getFileName() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- getFileType() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SourceFileType
-
Gets the value of the fileType property.
- getFirst() - Method in class org.jbiowh.core.datasets.gene.genome.utils.Chromosome
-
Return the first gene on the chromosome
- getFloat() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDataType
-
Gets the value of the float property.
- getFoodInteractions() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankFoodInteractions
-
- getForm() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- getFormat() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Binary
-
Gets the value of the format property.
- getFormat() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Data
-
Gets the value of the format property.
- getFormat() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.DbEntry
-
Gets the value of the format property.
- getFormat() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.File
-
Gets the value of the format property.
- getFormula() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getForwardLambda() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getForwardTau() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getFragment() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getFragment() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- getFRAGMENTFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SequenceTags
-
- getFragmentIon() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Peptide
-
Gets the value of the fragmentIon property.
- getFullConsensus() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantBiologicalRole
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Names
-
Get the fullName value
- getFullName() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.CvLookupType
-
Gets the value of the fullName property.
- getFULLNAMEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.NamesTags
-
- getFULLNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getFullNameFromNomenclatureAuthority() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getGel() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.TwoDimensionalIdentificationType
-
Gets the value of the gel property.
- getGelFreeIdentification() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType
-
Gets the value of the gelFreeIdentification property.
- getGelLink() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.GelType
-
Gets the value of the gelLink property.
- getGelLocation() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.TwoDimensionalIdentificationType
-
Gets the value of the gelLocation property.
- getGencode() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getGenCodeId() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- getGene() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- getGene() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankFeatures
-
- getGene2Accession() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getGene2AccessionPK() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- getGene2Ensembl() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getGene2PMID() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getGene2PMIDPK() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2PMID
-
- getGene2STS() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getGene2STSPK() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2STS
-
- getGene2UniGene() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getGene2UniGenePK() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2UniGene
-
- getGeneBank() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- getGeneBankAccessions() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- getGeneBankCDSCount() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.controller.GeneBankCDSJpaController
-
- getGeneBankCDSDBXrefs() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- getGeneBankCDSs() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- getGeneBankCount() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.controller.GeneBankJpaController
-
- getGeneBankFeatureses() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- getGeneBankWID() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- getGENEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.GeneTags
-
- getGeneGroup() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getGeneGroupPK() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneGroup
-
- getGeneId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getGeneID() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Ensembl
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2PMID
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2STS
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2UniGene
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneGroup
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoDBXrefs
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoSynonyms
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getGeneInfoCount() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.controller.GeneInfoJpaController
-
- getGeneInfoDBXrefs() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getGeneInfoDBXrefsPK() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoDBXrefs
-
- getGeneInfos() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getGeneInfos() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getGeneInfoSynonyms() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getGeneInfoSynonymsPK() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoSynonyms
-
- getGeneInfoWID() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2AccessionPK
-
- getGeneInfoWID() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Ensembl
-
- getGeneInfoWID() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2PMIDPK
-
- getGeneInfoWID() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2STSPK
-
- getGeneInfoWID() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2UniGenePK
-
- getGeneInfoWID() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneGroupPK
-
- getGeneInfoWID() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoDBXrefsPK
-
- getGeneInfoWID() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoSynonymsPK
-
- getGeneLink(boolean, Object) - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the Gene action
- getGENELOCATIONFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.GeneLocationTags
-
- getGENELOCATIONTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.GeneLocationTags
-
- getGeneLocusTag() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- getGeneLocusTag() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- getGenePosition() - Method in class org.jbiowh.core.datasets.gene.genome.utils.Chromosome
-
Return the gene position in the Chromosome
- getGenePTT() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getGenePTT() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- getGenePTT() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getGenePTTCount() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.controller.GenePTTJpaController
-
- getGenePTTs() - Method in class org.jbiowh.core.datasets.gene.genome.utils.Chromosome
-
Return the list of genes on the chromosome
- getGeneRefSeqUniprotPK() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneRefSeqUniprot
-
- getGeneric() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- getGeneRNT() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getGeneRNTCount() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.controller.GeneRNTJpaController
-
- getGeneStatus() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getGeneSymbol() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- getGeneSymbol() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- getGenomicNucleotideAccession() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- getGenomicNucleotideAccessionVersion() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- getGenomicNucleotideGi() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- getGenomicNucleotideGi() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- getGi() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- getGi() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankFeatures
-
- getGi() - Method in class org.jbiowh.tools.gene.PTTData
-
- getGraph() - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
Get the T tree in a graph object
- getGraph() - Method in class org.jbiowh.core.utility.jparelationship.JpaRelationship
-
Return the graph generated for the entities classes
- getGraphDijkstraShortestPath(Object, Object) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
Convenience method to find the shortest path via a single static method
call.
- getGraphics() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Gets the value of the graphics property.
- getGroup() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Bioml
-
- getGroup() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- getGrouping() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getGroupName() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGroup
-
- getHalfLife() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getHeader() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- getHeader() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.GO
-
- getHEADER() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOHeaderTags
-
Get the HEADER tag
- getHeader() - Method in class org.jbiowh.core.utility.fileformats.fasta.FastaEntry
-
Get the header
- getHeight() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getHeight() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Gets the value of the height property.
- getHexColour() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- getHomeURL() - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Get the the DataSet's Home URL
- getHOSTORGANISMFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.HostOrganismListTags
-
- getHOSTORGANISMLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.HostOrganismListTags
-
- getHyperscore() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- getIcon(String) - Method in class org.jbiowh.gui.component.icons.IconFetch
-
Return the ImageIcon from its file name
- getId() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getId() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoDBXrefsPK
-
- getId() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getId() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySubset
-
- getID() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOCommonTags
-
Get the ID tag
- getId() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLinkPK
-
- getId() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLinkPK
-
- getId() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLinkPK
-
- getId() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLinkPK
-
- getId() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- getId() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- getId() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Component
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Product
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Reaction
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Substrate
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- getId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getId() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- getId() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCycPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIPPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBankPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinECPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntActPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformIdPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGGPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKeyword
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINTPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDBPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAMPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMIDPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeqPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.parser.xml.DBReference
-
- getId() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyDivision
-
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aa
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aconflict
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Alink
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Amod
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Author
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Avariant
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Binary
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.BookTitle
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Cell
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Chromosome
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Clone
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.CommonName
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Copyright
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Da
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Data
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.DbEntry
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dmod
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dna
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Domain
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dstart
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dstop
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dvariant
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Editor
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Exon
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.File
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Form
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Gene
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Homolog
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Input
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Intron
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Journal
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Locus
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Name
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Note
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Organelle
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Organism
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Pages
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Particle
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Peptide
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Plasmid
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Promotor
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Protein
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ra
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rdomain
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Reference
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rmod
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rna
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rstart
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rstop
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rvariant
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Species
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.StsDomain
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Subunit
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Taxon
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Text
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Tissue
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Title
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Volume
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumType
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDataBinaryType
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDataType
-
Gets the value of the id property.
- getId(Object) - Method in class org.jbiowh.gui.datasets.EntityParserFieldProxy
-
Get the identifier for each DataSet entity
- getId1() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- getId2() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- getIdentifier() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.AvailabilityTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentDescriptionTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractionTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractorTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.XrefTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ConflictTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.DBReferenceTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.FeatureTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.InteractantTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.IsoformTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.KeywordTags
-
- getIds() - Method in class org.jbiowh.core.utility.fileformats.fasta.FastaEntry
-
Get the Ids map
- getImage() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getImage() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Gets the value of the image property.
- getImexId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getIMEXIDFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractionTags
-
- getIndex(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexes
-
Return the index from its key in the handler
- getIndex(int) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexes
-
Return the index from its number in the handler
- getIndexColumn(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Return the index column by its name
- getIndexColumn(int) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Return the index column by its number
- getIndexColumnCount() - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Return the number of columns included in the index
- getIndexColumnKey(SQLTableIndexColumn) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Return the map's key for the column
- getIndexColumnKey(int) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Return the map's key for the column
- getIndexColumnKey(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Return the map's key for the column
- getIndexCount() - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexes
-
Return the number of indexes in the table
- getIndexes() - Method in class org.jbiowh.core.dbms.sql.SQLTable
-
Return the table's indexes
- getIndexes() - Method in class org.jbiowh.gui.component.table.model.CreateTableColumnModel
-
Return the index's handler
- getIndexes() - Method in class org.jbiowh.gui.component.table.model.CreateTableIndexModel
-
Return the SQL index handler
- getIndexKey(SQLTableIndex) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexes
-
Return the index key in the handler.
- getIndexKey(int) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexes
-
Return the index key in the handler.
- getIndexKey(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexes
-
Return the index key in the handler.
- getIndexName() - Method in class org.jbiowh.gui.component.table.model.CreateTableColumnModel
-
Get the active index's name showed on the Index Column table
- getIndexSet() - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexes
-
Return a list of the index sorted by its internal number
- getIndication() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getINFERREDINTERACTIONFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InferredInteractionTags
-
- getINFERREDINTERACTIONLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InferredInteractionListTags
-
- getInFull() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getInFull() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getIngredients() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- getInheritedDivision() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getInheritedGencode() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getInheritedMCGencode() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getInitialLevel() - Method in class org.jbiowh.core.logger.VerbLogger
-
Return the initial information level to print the messages
- getINNNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getInstance() - Static method in class org.jbiowh.core.datasets.disease.omim.parser.links.OMIMLinks
-
Return a OMIMLinks
- getInstance() - Static method in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
Get the OMIM tables instance
- getInstance() - Static method in class org.jbiowh.core.datasets.domain.pfam.parser.links.PFamLinks
-
Return a PFamLinks instance
- getInstance() - Static method in class org.jbiowh.core.datasets.domain.pfam.parser.links.PFamOntologyLink
-
Return a PFamOntologyLink instance
- getInstance() - Static method in class org.jbiowh.core.datasets.domain.pfam.parser.links.PFamProteinLink
-
Return a PFamProteinLink instance
- getInstance() - Static method in class org.jbiowh.core.datasets.domain.pfam.parser.links.PFamTaxonomyLink
-
Return a PFamTaxonomyLink instance
- getInstance() - Static method in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
Return a PFamTables instance
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
Return the DrugBank tables instance
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.links.DrugBankProteinLink
-
Return a DrugBankProteinLink instance
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.AffectedOrganismsTags
-
Return a AffectedOrganismsTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.AHFSCodesTags
-
Return a AHFSCodesTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ATCCodesTags
-
Return a ATCCodesTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.BondTypeTags
-
Return a BondTypeTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.BrandsTags
-
Return a BrandsTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.CalculatedPropertiesTags
-
Return a CalculatedPropertiesTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.CarriersTags
-
Return a CarriersTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.CategoriesTags
-
Return a CategoriesTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DosagesTags
-
Return a DosagesTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugInteractionsTags
-
Return a DrugInteractionsTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugTags
-
Return a DrugTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.EnzymesTags
-
Return a EnzymesTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ExperimentalPropertiesTags
-
Return a ExperimentalPropertiesTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ExternalIdentifiersTags
-
Return a ExternalIdentifiersTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ExternalLinksTags
-
Return a ExternalLinksTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.FoodInteractionsTags
-
Return a FoodInteractionsTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.GroupsTags
-
Return a GroupsTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.IdentifiersTypeTags
-
Return a IdentifiersTypeTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ManufacturersTags
-
Return a ManufacturersTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.MixturesTags
-
Return a MixturesTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PackagersTags
-
Return a PackagersTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PatentsTags
-
Return a PatentsTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PFamsTags
-
Return a PFamsTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PricesTags
-
Return a PricesTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PropertyTypeTags
-
Return a PropertyTypeTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ProteinSequencesTags
-
Return a ProteinSequencesTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.SecondaryAccessionNumbersTags
-
Return a SecondaryAccessionNumbersTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.SynonymsTags
-
Return a SynonymsTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.TargetBondTypeTags
-
Return a TargetBondTypeTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.TargetsTags
-
Return a TargetsTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.TransportersTags
-
Return a TransportersTags
- getInstance() - Static method in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
Return a GeneTables
- getInstance() - Static method in class org.jbiowh.core.datasets.gene.gene.parser.links.GeneKEGGGeneLink
-
Return a GeneKEGGGeneLink
- getInstance() - Static method in class org.jbiowh.core.datasets.gene.gene.parser.links.GeneLinks
-
Return a GeneLinks
- getInstance() - Static method in class org.jbiowh.core.datasets.gene.gene.parser.links.GeneOMIMLink
-
Return a GeneOMIMLink
- getInstance() - Static method in class org.jbiowh.core.datasets.gene.gene.parser.links.GeneOntologyLink
-
Return a GeneOntologyLink
- getInstance() - Static method in class org.jbiowh.core.datasets.gene.genebank.parser.GeneBankTables
-
Return a GeneBankTables instance
- getInstance() - Static method in class org.jbiowh.core.datasets.gene.genebank.parser.links.GeneBankGeneLink
-
Return a GeneBankGeneLink instance
- getInstance() - Static method in class org.jbiowh.core.datasets.gene.genebank.parser.links.GeneBankLinks
-
Return a GeneBankLinks instance
- getInstance() - Static method in class org.jbiowh.core.datasets.gene.genebank.utils.GeneBankToFasta
-
Return a GeneBankToFasta instance
- getInstance() - Static method in class org.jbiowh.core.datasets.gene.genome.parser.GenePTTTables
-
Return a GenePTTTables
- getInstance() - Static method in class org.jbiowh.core.datasets.gene.genome.parser.links.GeneGenePTTLink
-
Return a GeneGenePTTLink instance
- getInstance() - Static method in class org.jbiowh.core.datasets.gene.genome.parser.links.GenePTTLinks
-
Return a GenePTTLinks instance
- getInstance() - Static method in class org.jbiowh.core.datasets.gene.genome.parser.links.GenePTTTaxonomyLink
-
Return a GenePTTTaxonomyLink instance
- getInstance() - Static method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Return the DataSetFactory object
- getInstance() - Static method in class org.jbiowh.core.datasets.mainloader.DataSetsTables
-
- getInstance() - Static method in class org.jbiowh.core.datasets.mainloader.WIDFactory
-
Return a WIDFactory
- getInstance() - Static method in class org.jbiowh.core.datasets.ontology.parser.links.OntologyLinks
-
Return a OntologyLinks
- getInstance() - Static method in class org.jbiowh.core.datasets.ontology.parser.OntologyTables
-
Return a OntologyTables
- getInstance() - Static method in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
Return a
- getInstance() - Static method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.PathwayPrintOnTSVFile
-
Return a PathwayPrintOnTSVFile
- getInstance() - Static method in class org.jbiowh.core.datasets.pathway.kegg.parser.links.KEGGCompoundDrugBankLink
-
Return a KEGGCompoundDrugBankLink
- getInstance() - Static method in class org.jbiowh.core.datasets.pathway.kegg.parser.links.KEGGLinks
-
Return a KEGGLinks
- getInstance() - Static method in class org.jbiowh.core.datasets.pathway.kegg.parser.links.KEGGPathwayGeneInfoLink
-
Return a KEGGPathwayGeneInfoLink
- getInstance() - Static method in class org.jbiowh.core.datasets.pathway.kegg.parser.links.KEGGPathwayProteinLink
-
Return a KEGGPathwayProteinLink
- getInstance() - Static method in class org.jbiowh.core.datasets.pathway.kegg.parser.links.KEGGPathwayTaxonomyLink
-
Return a KEGGPathwayTaxonomyLink
- getInstance() - Static method in class org.jbiowh.core.datasets.ppi.parser.links.MIF25Links
-
Return a MIF25Links
- getInstance() - Static method in class org.jbiowh.core.datasets.ppi.parser.links.MIF25ProteinLink
-
Return a MIF25ProteinLink
- getInstance() - Static method in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
Return a MIF25Tables
- getInstance() - Static method in class org.jbiowh.core.datasets.protclust.parser.links.UniRefLinks
-
Return a UniRefLinks
- getInstance() - Static method in class org.jbiowh.core.datasets.protclust.parser.links.UniRefProteinLink
-
Return a UniRefProteinLink
- getInstance() - Static method in class org.jbiowh.core.datasets.protclust.parser.UniRefTables
-
Return a UniRefTables
- getInstance() - Static method in class org.jbiowh.core.datasets.protein.parser.links.ProteinGeneLink
-
Return a ProteinGeneLink
- getInstance() - Static method in class org.jbiowh.core.datasets.protein.parser.links.ProteinGenePTTLink
-
Return a ProteinGenePTTLink instance
- getInstance() - Static method in class org.jbiowh.core.datasets.protein.parser.links.ProteinKEGGEnzymeLink
-
Return a ProteinKEGGEnzymeLink
- getInstance() - Static method in class org.jbiowh.core.datasets.protein.parser.links.ProteinOntologyLink
-
Return a ProteinOntologyLink
- getInstance() - Static method in class org.jbiowh.core.datasets.protein.parser.links.ProteinTaxonomyLink
-
Return a ProteinTaxonomyLink
- getInstance() - Static method in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
Return a ProteinTables
- getInstance() - Static method in class org.jbiowh.core.datasets.protein.utils.ProteinUtils
-
Return a ProteinUtils instance
- getInstance() - Static method in class org.jbiowh.core.datasets.taxonomy.parser.links.TaxonomyLinks
-
Return a
- getInstance() - Static method in class org.jbiowh.core.datasets.taxonomy.parser.TaxonomyTables
-
Return a TaxonomyTables
- getInstance() - Static method in class org.jbiowh.core.datasets.taxonomy.utils.Lineage
-
Return a Lineage instance
- getInstance() - Static method in class org.jbiowh.core.dbms.transfer.TransferData
-
Return a TransferData instance
- getInstance() - Static method in class org.jbiowh.core.dbms.WHDBMS
-
Return a WHDBMS
- getInstance() - Static method in class org.jbiowh.core.logger.VerbLogger
-
Return a VerbLogger
- getInstance() - Static method in class org.jbiowh.core.utility.jparelationship.JpaEntitiesSelected
-
Return a JpaEntitiesSelected instance
- getInstance() - Static method in class org.jbiowh.core.utility.jparelationship.JpaRelationship
-
Return a JpaRelationship instance
- getInstance() - Static method in class org.jbiowh.core.utility.utils.BioWHPattern
-
Return a BioWHPattern
- getInstance() - Static method in class org.jbiowh.core.utility.utils.BioWHTime
-
Return a BioWHTime
- getInstance() - Static method in class org.jbiowh.core.utility.utils.ExploreDirectory
-
Return a ExploreDirectory
- getInstance() - Static method in class org.jbiowh.core.utility.utils.ParseFiles
-
Return a ParseFiles
- getInstance() - Static method in class org.jbiowh.core.utility.utils.ReadLinesToList
-
Return a ReadLinesToList instance
- getInstance() - Static method in class org.jbiowh.core.utility.utils.SavedResults
-
Return a SavedResults
- getInstance() - Static method in class org.jbiowh.gui.component.icons.IconFetch
-
Return a IconFetch instance
- getInstance() - Static method in class org.jbiowh.gui.component.panel.result.ResultPanelFactory
-
Return a ResultPanelFactory
- getInstance() - Static method in class org.jbiowh.gui.component.panel.sql.syntax.SQLFunctionsAndOperators
-
Return a SQLFunctionsAndOperators
- getInstance() - Static method in class org.jbiowh.gui.component.panel.sql.syntax.SQLReservedWords
-
Return a SQLReservedWords
- getInstance() - Static method in class org.jbiowh.gui.component.panel.sql.syntax.SQLSpecialChar
-
Return a SQLSpecialChar
- getInstance() - Static method in class org.jbiowh.gui.datasets.EntityParserFieldProxy
-
Return a EntityParserFieldProxy
- getInstance() - Static method in class org.jbiowh.gui.datasets.ListViewProxy
-
Return a ListViewProxy
- getInstitution() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PersonType
-
Gets the value of the institution property.
- getInstrument() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.MzData.Description
-
Gets the value of the instrument property.
- getInstrumentName() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.InstrumentDescriptionType
-
Gets the value of the instrumentName property.
- getInt() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDataType
-
Gets the value of the int property.
- getIntactID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- getINTACTIDFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.InteractantTags
-
- getIntenArrayBinary() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumType
-
Gets the value of the intenArrayBinary property.
- getINTERACTANTFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.InteractantTags
-
- getINTERACTIONDETECTIONMETHODFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentDescriptionTags
-
- getINTERACTIONFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractionTags
-
- getINTERACTIONLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractionListTags
-
- getInteractionRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getINTERACTIONREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- getINTERACTIONTYPEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractionTags
-
- getINTERACTORFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractorTags
-
- getINTERACTORLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractorListTags
-
- getInteractorRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getInteractorRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- getINTERACTORREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentalInteractorTags
-
- getINTERACTORREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- getINTERACTORTYPEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractorTags
-
- getInterproId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamInterpro
-
- getInterval() - Method in class org.jbiowh.gui.component.popup.MenuScroller
-
Returns the scroll interval in milliseconds
- getIntraMolecular() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getINTRAMOLECULARFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractionTags
-
- getIntResult(String, String) - Method in class org.jbiowh.core.utility.utils.SavedResults
-
Get internal result
- getIonSelection() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PrecursorType
-
Gets the value of the ionSelection property.
- getISA() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the ISA Tags
- getIsAOntology() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsA
-
- getIsAOntologyWID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsAPK
-
- getIsLink() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getISLINKFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureRangeTags
-
- getISOBSOLETE() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the ISOBSOLETE Tags
- getISOFORMFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.IsoformTags
-
- getISOFORMTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.IsoformTags
-
- getIsRepresentative() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- getItem() - Method in class org.jbiowh.gui.sqltables.listener.DataTypeComboBoxEditor
-
- getjBClose() - Method in class org.jbiowh.gui.JBioWH
-
- getjBOpen() - Method in class org.jbiowh.gui.JBioWH
-
- getjBSearch() - Method in class org.jbiowh.gui.JBioWH
-
- getjCDataSet() - Method in class org.jbiowh.gui.component.panel.SearchPanel
-
- getjFileChooser1() - Method in class org.jbiowh.gui.component.file.FileChooser
-
Get the JFileChooser component
- getJgraphStyle(Object) - Method in class org.jbiowh.gui.datasets.EntityParserFieldProxy
-
Get the identifier for each DataSet entity
- getjLConstrains() - Method in class org.jbiowh.gui.component.panel.SearchPanel
-
- getjLFound() - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Get the found label
- getjLProgress() - Method in class org.jbiowh.gui.component.dialog.progress.ProgressDialog
-
- getjMClose() - Method in class org.jbiowh.gui.JBioWH
-
- getjMEdit() - Method in class org.jbiowh.gui.JBioWH
-
- getjMMSTool() - Method in class org.jbiowh.gui.JBioWH
-
- getjMOpen() - Method in class org.jbiowh.gui.JBioWH
-
- getjMOpenSQLScript() - Method in class org.jbiowh.gui.JBioWH
-
- getjMSQL() - Method in class org.jbiowh.gui.JBioWH
-
- getjMTabs() - Method in class org.jbiowh.gui.JBioWH
-
- getJournal() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- getJpaExternalRelationship(Class, EntityManagerFactory) - Method in class org.jbiowh.core.utility.jparelationship.JpaRelationship
-
Return a map with the external relationship fields and its class for a
JBioWH entity
- getJpaExternalRelationship(Class, EntityManager) - Method in class org.jbiowh.core.utility.jparelationship.JpaRelationship
-
Return a map with the external relationship fields and its class for a
JBioWH entity
- getJpqlQuery(List, JPLConstrains) - Method in class org.jbiowh.core.dbms.sql.JPQLBuilder
-
This method create the JPL query
- getjProgressBar() - Method in class org.jbiowh.gui.component.dialog.progress.ProgressDialog
-
- getjScrollPane1() - Method in class org.jbiowh.gui.component.panel.SearchPanel
-
- getjSQLEditor() - Method in class org.jbiowh.gui.component.panel.sql.SQLEditorPanel
-
Get the SQL editor pane
- getjTabbedPane2() - Method in class org.jbiowh.gui.JBioWH
-
- getjTable() - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Get the Table
- getjTDataSets() - Method in class org.jbiowh.gui.component.panel.HomePanel
-
Get the Dataset Table
- getjTreeResult() - Method in class org.jbiowh.gui.component.panel.TreeViewPanel
-
Get the TreeResult
- getjTSearch() - Method in class org.jbiowh.gui.component.panel.SearchPanel
-
- getkEGGCompound() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLink
-
- getkEGGCompound() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- getkEGGCompound() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- getkEGGCompoundAsCofactor() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getkEGGCompoundAsEffector() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getkEGGCompoundAsInhibitor() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getkEGGCompoundAsProduct() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getkEGGCompoundAsSubstrate() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getKEGGCompoundCount() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGCompoundJpaController
-
- getkEGGCompoundDBLink() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getKEGGCompoundDBLinkPK() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLink
-
- getKEGGCompoundLink(boolean, Collection<KEGGCompound>) - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the KEGGCompound action
- getkEGGCompoundName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getkEGGCompounds() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getkEGGCompounds() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getKEGGCompoundWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLinkPK
-
- getkEGGCompoundWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- getKEGGCompoundWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- getkEGGEnzyme() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLink
-
- getkEGGEnzyme() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- getkEGGEnzyme() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthology
-
- getkEGGEnzyme() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- getkEGGEnzyme() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getkEGGEnzymeAsCofactor() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getkEGGEnzymeAsEffector() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getkEGGEnzymeAsInhibitor() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getkEGGEnzymeClass() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getKEGGEnzymeCount() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGEnzymeJpaController
-
- getkEGGEnzymeDBLink() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getKEGGEnzymeDBLinkPK() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLink
-
- getKEGGEnzymeLink(boolean, Collection<KEGGEnzyme>) - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the Enzyme action
- getkEGGEnzymeName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getkEGGEnzymeNameDirectly() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getkEGGEnzymeOrthology() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getKEGGEnzymeOrthologyPK() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthology
-
- getkEGGEnzymes() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getkEGGEnzymes() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getkEGGEnzymeSysName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getKEGGEnzymeWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLinkPK
-
- getkEGGEnzymeWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- getKEGGEnzymeWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- getKEGGEnzymeWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthologyPK
-
- getkEGGEnzymeWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- getKEGGEnzymeWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- getKeggFileName() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFile
-
Get the KEGG file name
- getkEGGGene() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLink
-
- getkEGGGene() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- getkEGGGene() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTarget
-
- getkEGGGene() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- getkEGGGene() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthology
-
- getKEGGGeneCount() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGGeneJpaController
-
- getkEGGGeneDBLink() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getKegggenedblinkPK() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLink
-
- getKEGGGeneDBLinkPK() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLink
-
- getkEGGGeneDisease() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getkEGGGeneDrugTarget() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getKEGGGeneDrugTargetPK() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTarget
-
- getKEGGGeneLink(boolean, Collection<KEGGGene>) - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the KEGGGene action
- getkEGGGeneName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getkEGGGeneNameDirectly() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getkEGGGeneOrthology() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getKEGGGeneOrthologyPK() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthology
-
- getkEGGGenes() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getkEGGGenes() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getKEGGGeneWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLinkPK
-
- getkEGGGeneWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- getKEGGGeneWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- getKEGGGeneWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTargetPK
-
- getkEGGGeneWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- getKEGGGeneWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- getKEGGGeneWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthologyPK
-
- getkEGGGlycan() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLink
-
- getkEGGGlycan() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- getkEGGGlycanAsProduct() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getkEGGGlycanAsSubstrate() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getkEGGGlycanClass() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getKEGGGlycanCount() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGGlycanJpaController
-
- getkEGGGlycanDBLink() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getKeggglycandblinkPK() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLink
-
- getKEGGGlycanDBLinkPK() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLink
-
- getKEGGGlycanLink(boolean, Collection<KEGGGlycan>) - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the KEGGGlycan action
- getkEGGGlycanName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getKEGGGlycanWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLinkPK
-
- getkEGGGlycanWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- getKEGGGlycanWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- getkEGGPathway() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- getkEGGPathway() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- getkEGGPathway() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- getKEGGPathwayCount() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGPathwayJpaController
-
- getkEGGPathwayEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getkEGGPathwayEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getkEGGPathwayEntryGraphic() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- getkEGGPathwayEntryWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getKEGGPathwayEntryWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getKEGGPathwayLink(boolean, Collection<KEGGPathway>) - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the KEGGPathway action
- getkEGGPathwayReaction() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getkEGGPathwayRelation() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getkEGGPathwayRelation() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubType
-
- getkEGGPathwayRelationSubType() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- getKeggpathwayrelationsubtypePK() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubType
-
- getKEGGPathwayRelationWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubTypePK
-
- getkEGGPathways() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getkEGGPathways() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getkEGGPathways() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getkEGGPathways() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getkEGGPathways() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getkEGGPathways() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getkEGGPathwayWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- getKEGGPathwayWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- getkEGGPathwayWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- getKEGGPathwayWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- getkEGGPathwayWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- getKEGGPathwayWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- getkEGGReaction() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getkEGGReaction() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- getkEGGReactionAsProduct() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getkEGGReactionAsProduct() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getkEGGReactionAsSubstrate() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getkEGGReactionAsSubstrate() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getKEGGReactionCount() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGReactionJpaController
-
- getKEGGReactionLink(boolean, Collection<KEGGReaction>) - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the KEGGReaction action
- getkEGGReactionName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getkEGGReactions() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getkEGGReactionWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- getKEGGReactionWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- getkEGGRPair() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getKEGGRPairCount() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGRPairJpaController
-
- getKEYFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.DBReferenceTags
-
- getKeyName() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankFeatures
-
- getKeyword() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKeyword
-
- getKEYWORDFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.KeywordTags
-
- getKeywords() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- getKind() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- getKind() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- getKingdom() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomy
-
- getKnownAction() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- getLabel() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamMarkupKey
-
- getLabel() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aa
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aconflict
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Alink
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Amod
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Author
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Avariant
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Binary
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Bioml
-
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.BookTitle
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Cell
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Chromosome
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Clone
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.CommonName
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Copyright
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Da
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Data
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.DbEntry
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dmod
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dna
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Domain
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dstart
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dstop
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dvariant
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Editor
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Exon
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.File
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Form
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Gene
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Homolog
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Input
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Intron
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Journal
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Locus
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Name
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Note
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Organelle
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Organism
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Pages
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Particle
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Peptide
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Plasmid
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Promotor
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Protein
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ra
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rdomain
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Reference
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rmod
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rna
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rstart
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rstop
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rvariant
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Species
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.StsDomain
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Subunit
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Taxon
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Text
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Tissue
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Title
-
Gets the value of the label property.
- getLabel() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Volume
-
Gets the value of the label property.
- getLABELFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.InteractantTags
-
- getLast() - Method in class org.jbiowh.core.datasets.gene.genome.utils.Chromosome
-
Return the last gene on the chromosome
- getLength() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- getLength() - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexColumn
-
Return the column's length
- getLength() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PeakListBinaryType.Data
-
Gets the value of the length property.
- getLength() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDataType
-
Gets the value of the length property.
- getLENGTHFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SequenceTags
-
- getLevel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- getLevel() - Method in class org.jbiowh.core.logger.VerbLogger
-
Return the information level to print the messages
- getLEVELFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.EntrySetTags
-
- getLineage() - Method in class org.jbiowh.core.datasets.taxonomy.utils.Lineage
-
- getLineage(long) - Method in class org.jbiowh.core.datasets.taxonomy.utils.Lineage
-
Create a linked list with the lineage tax ids
- getLineageByString(long) - Method in class org.jbiowh.core.datasets.taxonomy.utils.Lineage
-
Create a linked list with the lineage tax names
- getLineageMap() - Method in class org.jbiowh.core.datasets.taxonomy.utils.LineageMap
-
Get the lineage map
- getLineageString(String) - Method in class org.jbiowh.core.datasets.taxonomy.utils.Lineage
-
Get the lineage in a string using the *delimiter* between them
- getLineageString(long, String) - Method in class org.jbiowh.core.datasets.taxonomy.utils.Lineage
-
Get the lineage for the taxId in a string using the *delimiter* between
them
- getLink() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- getLink() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- getLink() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- getLink() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- getLink() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- getLink() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getLink() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- getLink() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Gets the value of the link property.
- getLink() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Gets the value of the link property.
- getLINKFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getLinks() - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the basic data to show
- getLinks() - Method in class org.jbiowh.gui.datasets.disease.OMIMDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.domain.pfam.PFamDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.drug.DrugBankDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.gene.gene.GeneDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.gene.genebank.GeneBankDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.gene.genome.GenePTTDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.ontology.OntologyDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.pathway.compound.KEGGCompoundDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.pathway.enzyme.KEGGEnzymeDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.pathway.gene.KEGGGeneDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.pathway.glycan.KEGGGlycanDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.pathway.KEGGPathwayDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.pathway.reaction.KEGGReactionDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.protein.ProteinDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.protfam.ProtFamDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.taxonomy.TaxonomyDataSetView
-
- getListToPrint(Collection, String) - Method in class org.jbiowh.gui.datasets.EntityParserFieldProxy
-
Get the fields to print for a collection of DataSet and the file name
- getListToPrint(Object, String) - Method in class org.jbiowh.gui.datasets.EntityParserFieldProxy
-
Get the fields to print for a collection of DataSet and the file name
- getLoadDate() - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Get the DataSet's load date
- getLoadedBy() - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Get the DataSet's load user
- getLoadedByDefault() - Method in class org.jbiowh.core.utility.jparelationship.JpaEntitiesSelected
-
Return the JBioWH entity's names that always are inserted during the
JBioWH copy process
- getLocation() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- getLocation() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- getLocation() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankFeatures
-
- getLocation() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- getLocation() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- getLOCATIONFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.LocationTags
-
- getLOCATIONFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SubCellularLocationTags
-
- getLocationType() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getLOCATIONTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getLOCATIONTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.LocationTags
-
- getLocusName() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- getLocusTag() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getLocusTag() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- getLogger() - Static method in class org.jbiowh.core.logger.VerbLogger
-
Return the logger
- getLongColumnLabel(String, String) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Get the integer columnLabel value returned by the SQL sentence
- getLongColumnLabel(String, String) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Get the integer columnLabel value returned by the SQL sentence
- getMainField() - Method in class org.jbiowh.core.datasets.disease.omim.search.SearchOMIM
-
- getMainField() - Method in class org.jbiowh.core.datasets.domain.pfam.search.SearchPFam
-
- getMainField() - Method in class org.jbiowh.core.datasets.drug.drugbank.search.SearchDrugBank
-
- getMainField() - Method in class org.jbiowh.core.datasets.gene.gene.search.SearchGeneInfo
-
- getMainField() - Method in class org.jbiowh.core.datasets.gene.genebank.search.SearchGeneBank
-
- getMainField() - Method in class org.jbiowh.core.datasets.gene.genome.search.SearchGenePTT
-
- getMainField() - Method in class org.jbiowh.core.datasets.ontology.search.SearchOntology
-
- getMainField() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGCompound
-
- getMainField() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-
- getMainField() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- getMainField() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGlycan
-
- getMainField() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGPathway
-
- getMainField() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGReaction
-
- getMainField() - Method in class org.jbiowh.core.datasets.protclust.search.SearchUniRef
-
- getMainField() - Method in class org.jbiowh.core.datasets.protein.search.SearchProtein
-
- getMainField() - Method in class org.jbiowh.core.datasets.taxonomy.search.SearchTaxonomy
-
- getMainField() - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Get the main field name used it in the search
- getMainURLParsed() - Method in class org.jbiowh.core.dbms.WHDBMS
-
Return the URL without the jdbc:// prefix
- getMainURLParsed(WHDBMSFactory) - Method in class org.jbiowh.core.dbms.WHDBMS
-
Return the URL without the jdbc:// prefix
- getManufacturer() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- getMapLocation() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getMass() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getMass() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getMass() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getMass() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getMass() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- getMASSFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getMASSFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SequenceTags
-
- getMaxI() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- getMcgencode() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getMechanismOfAction() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getMessages() - Method in exception org.jbiowh.core.utility.controller.exceptions.IllegalOrphanException
-
- getMethod() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMethod
-
- getMethod() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- getMethod() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getMETHODFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getMethodOfCombination() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType.AcqSpecification
-
Gets the value of the methodOfCombination property.
- getMh() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- getMh() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- getMifBioSourceTypeCellType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifBioSourceTypeCellType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifBioSourceTypeCellType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getMifBioSourceTypeCellType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifBioSourceTypeCellType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifBioSourceTypeCellType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifBioSourceTypeCellType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifBioSourceTypeCellType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifBioSourceTypeCompartment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifBioSourceTypeCompartment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifBioSourceTypeCompartment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getMifBioSourceTypeCompartment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifBioSourceTypeCompartment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifBioSourceTypeCompartment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifBioSourceTypeCompartment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifBioSourceTypeCompartment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifBioSourceTypeTissue() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifBioSourceTypeTissue() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifBioSourceTypeTissue() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifBioSourceTypeTissue() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifBioSourceTypeTissue() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifBioSourceTypeTissue() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifBioSourceTypeTissue() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifBioSourceTypeTissueD() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMIFEntryExperimentCount() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryExperimentJpaController
-
- getmIFEntryExperimentWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getMIFEntryExperimentWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getmIFEntryExperimentWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getMIFEntryExperimentWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getmIFEntryExperimentWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getMIFEntryExperimentWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getmIFEntryInteraction() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getMIFEntryInteractionCount() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryInteractionJpaController
-
- getmIFEntryInteractionWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- getMIFEntryInteractionWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- getmIFEntryInteractionWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getMIFEntryInteractionWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getmIFEntryInteractionWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMIFEntryInteractionWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- getMIFEntryInteractorCount() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryInteractorJpaController
-
- getmIFEntryInteractorWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getMIFEntryInteractorWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getmIFEntrySet() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- getMIFEntrySetCount() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySetJpaController
-
- getMifEntrySetEntry() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getmIFEntrySetEntry() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifEntrySetEntry() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getmIFEntrySetEntry() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- getmIFEntrySetEntry() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getMIFEntrySetEntryCount() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySetEntryJpaController
-
- getmIFEntrySetEntryWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMIFEntrySetEntryWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getmIFEntrySetEntryWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getmIFEntrySetEntryWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getMIFEntrySetEntryWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getmIFEntrySetEntryWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getMIFEntrySetEntryWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getmIFEntrySetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- getMifEntrySource() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- getMifEntrySource() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifEntrySource() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifEntrySource() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- getMifEntrySource() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMIFEntrySourceCount() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySourceJpaController
-
- getMifExperimentFeatDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifExperimentFeatDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifExperimentFeatDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifExperimentFeatDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifExperimentFeatDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifExperimentFeatDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifExperimentFeatDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifExperimentInterDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifExperimentInterDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifExperimentInterDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifExperimentInterDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifExperimentInterDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifExperimentInterDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifExperimentInterDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifExperimentPartIdentMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifExperimentPartIdentMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifExperimentPartIdentMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifExperimentPartIdentMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifExperimentPartIdentMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifExperimentPartIdentMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifExperimentPartIdentMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifFeatureFeatDetMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifFeatureFeatDetMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifFeatureFeatDetMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifFeatureFeatDetMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifFeatureFeatDetMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifFeatureFeatDetMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifFeatureFeatDetMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifFeatureFeatureRange() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifFeatureFeatureType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifFeatureFeatureType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifFeatureFeatureType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifFeatureFeatureType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifFeatureFeatureType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifFeatureFeatureType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifFeatureFeatureType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifInferredInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- getMIFInferredInteractionParticipantPK() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipant
-
- getmIFInferredInteractionParticipantPK() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipant
-
- getMifInteractionInferredInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifInteractionInferredInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipant
-
- getMifInteractionInferredInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- getMIFInteractionInferredInteractionWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipantPK
-
- getMifInteractionInteractionType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifInteractionInteractionType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifInteractionInteractionType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifInteractionInteractionType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifInteractionInteractionType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifInteractionInteractionType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifInteractionInteractionType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getMIFInteractionParticipantCount() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFInteractionParticipantJpaController
-
- getMIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantBiologicalRole
-
- getmIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- getMIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- getmIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getMIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getmIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getMIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getmIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameterPK
-
- getmIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getMIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getMifInteractorInteractorType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getMifInteractorInteractorType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifInteractorInteractorType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifInteractorInteractorType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifInteractorInteractorType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifInteractorInteractorType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifInteractorInteractorType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getmIFOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getmIFOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifOtherAvailability() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getmIFOtherAvailabilityPK() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- getMIFOtherAvailabilityPK() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- getMifOtherBibRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getmIFOtherBibRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getMifOtherBibref() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifOtherBibref() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifOtherBioSourceType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getMifOtherBioSourceType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getMifOtherBioSourceType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getMifOtherBioSourceType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifOtherBioSourceType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getMifOtherBioSourceType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifOtherBioSourceType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMIFOtherBioSourceTypeCount() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFOtherBioSourceTypeJpaController
-
- getmIFOtherBioSourceTypeWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getMIFOtherBioSourceTypeWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getmIFOtherBioSourceTypeWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getMIFOtherBioSourceTypeWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getmIFOtherBioSourceTypeWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getMIFOtherBioSourceTypeWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getMifOtherConfidence() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifOtherConfidence() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifOtherConfidence() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifOtherConfidence() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifOtherConfidence() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- getMifOtherConfidence() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifOtherConfidence() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifOtherConfidence() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifOtherConfidence() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifOtherConfidence() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifOtherExperimentRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifOtherExperimentRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- getMifOtherExperimentRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- getMifOtherExperimentRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getMifOtherExperimentRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getMifOtherExperimentRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifOtherExperimentRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getmIFOtherExperimentRefPK() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- getMIFOtherExperimentRefPK() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- getmIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getmIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailabilityPK
-
- getmIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- getmIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getmIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRefPK
-
- getmIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getmIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getmIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getmIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getmIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.OpenCvType
-
- getMifOtherWIDExperimentRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getmIFOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getMifParticipantBiologicalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifParticipantBiologicalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifParticipantBiologicalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifParticipantBiologicalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifParticipantBiologicalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifParticipantBiologicalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifParticipantBiologicalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifParticipantExperimentalInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getMifParticipantExperimentalInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- getMifParticipantExperimentalPreparation() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifParticipantExperimentalPreparation() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifParticipantExperimentalPreparation() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- getMifParticipantExperimentalPreparation() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifParticipantExperimentalPreparation() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifParticipantExperimentalPreparation() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifParticipantExperimentalPreparation() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifParticipantExperimentalPreparation() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifParticipantExperimentalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifParticipantExperimentalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifParticipantExperimentalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- getMifParticipantExperimentalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifParticipantExperimentalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifParticipantExperimentalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifParticipantExperimentalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifParticipantExperimentalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getmIFParticipantFeatureWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getMIFParticipantFeatureWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getmIFParticipantFeatureWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getMIFParticipantFeatureWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getmIFParticipantFeatureWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getMIFParticipantFeatureWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getMifParticipantParameter() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifParticipantParameter() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMIFParticipantParameterPK() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getmIFParticipantParameterPK() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getMifParticipantPartIdentMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifParticipantPartIdentMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifParticipantPartIdentMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- getMifParticipantPartIdentMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifParticipantPartIdentMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifParticipantPartIdentMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifParticipantPartIdentMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifParticipantPartIdentMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMIMNumber() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getMIMNumber() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- getMinorVersion() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- getMINORVERSIONFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.EntrySetTags
-
- getMissed_cleavages() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- getModAccession() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Modification
-
Gets the value of the modAccession property.
- getModAvgDelta() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Modification
-
Gets the value of the modAvgDelta property.
- getModDatabase() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Modification
-
Gets the value of the modDatabase property.
- getModDatabaseVersion() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Modification
-
Gets the value of the modDatabaseVersion property.
- getModDate() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- getModelEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getModelEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getModelEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getModelled() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMODELLEDFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractionTags
-
- getModelLength() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getModelStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getModelStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getModelStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getModificationDate() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getModificationItem() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Peptide
-
Gets the value of the modificationItem property.
- getModified() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getModified() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- getMODIFIED() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EntryTags
-
- getMODIFIEDFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SequenceTags
-
- getModLocation() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Modification
-
Gets the value of the modLocation property.
- getModMonoDelta() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Modification
-
Gets the value of the modMonoDelta property.
- getMolecularWeight() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.TwoDimensionalIdentificationType
-
Gets the value of the molecularWeight property.
- getMolecule() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getMOLECULEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getMolType() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- getMonth() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getMouseCorr() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getMsLevel() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PrecursorType
-
Gets the value of the msLevel property.
- getMsLevel() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType.SpectrumInstrument
-
Gets the value of the msLevel property.
- getMsvLambda() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getMsvMu() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getMzArrayBinary() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumType
-
Gets the value of the mzArrayBinary property.
- getMzData() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType
-
Gets the value of the mzData property.
- getMzRangeStart() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType.SpectrumInstrument
-
Gets the value of the mzRangeStart property.
- getMzRangeStop() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType.SpectrumInstrument
-
Gets the value of the mzRangeStop property.
- getName() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getName() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- getName() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- getName() - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Get the DataSet's name
- getName() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getName() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySubset
-
- getName() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- getNAME() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOCommonTags
-
Get the NAME tag
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthology
-
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTargetPK
-
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthology
-
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubTypePK
-
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Alt
-
Gets the value of the name property.
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Gets the value of the name property.
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Gets the value of the name property.
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Gets the value of the name property.
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Product
-
Gets the value of the name property.
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Reaction
-
Gets the value of the name property.
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Substrate
-
Gets the value of the name property.
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Subtype
-
Gets the value of the name property.
- getName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getName() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- getName() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getName() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- getName() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformNamePK
-
- getName() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- getName() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinNamePK
-
- getNAME() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EntryTags
-
- getName() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyDivision
-
- getName() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- getName() - Method in class org.jbiowh.core.dbms.sql.SQLTable
-
Return the table's name
- getName() - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Return the column's name
- getName() - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Return the index's name
- getName() - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexColumn
-
Return the column's name
- getName() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.DbEntry
-
Gets the value of the name property.
- getName() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Input
-
Gets the value of the name property.
- getName() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.CvParamType
-
Gets the value of the name property.
- getName() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PersonType
-
Gets the value of the name property.
- getName() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SoftwareType
-
Gets the value of the name property.
- getName() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.UserParamType
-
Gets the value of the name property.
- getNameAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getNAMEACFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.AttributeListTags
-
- getNameClass() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonym
-
- getNameClass() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonymNameClass
-
- getNAMEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.AttributeListTags
-
- getNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.GeneLocationTags
-
- getNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.GeneTags
-
- getNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.IsoformTags
-
- getNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.OrganismTags
-
- getNameOfFile() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SourceFileType
-
Gets the value of the nameOfFile property.
- getNames() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.OpenCvType
-
- getNAMESFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.NamesTags
-
- getNameSpace() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getNAMESPACE() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the NAMESPACE Tags
- getNCBITAXIDFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.BioSourceTypeTags
-
- getNegative() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getNEGATIVEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractionTags
-
- getNeighbors(JBioWHGraph, DrugBank) - Method in class org.jbiowh.tools.examples.DrugNeighbors
-
- getNext() - Method in class org.jbiowh.core.datasets.gene.genome.utils.Chromosome
-
Return the next gene to the current
- getNextscore() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- getNodes() - Method in class org.jbiowh.gui.component.panel.TreeViewPanel
-
Get the nodes list
- getNomenclatureStatus() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getNoSeqs() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- getNote() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- getNote() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- getNote() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Protein
-
- getNoteEvidence() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- getNOTEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.IsoformTags
-
- getNotFound() - Method in class org.jbiowh.core.utility.msms.MSData
-
Get the proteins id not found in the JBioWH relational schema
- getNotFound() - Method in interface org.jbiowh.core.utility.msms.MSFactory
-
Get the proteins id not found in the JBioWH relational schema
- getNotTaxonomy() - Method in class org.jbiowh.core.datasets.taxonomy.utils.LineageMap
-
Get the set of taxId that are not included into the lineage
- getNumber() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getNumber() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- getNumber() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getNumber() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Gets the value of the number property.
- getNumber() - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Return the column's number
- getNumber() - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Return the index's number
- getNumber() - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexColumn
-
Return the column's number
- getNumber() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Chromosome
-
Gets the value of the number property.
- getNumberArchs() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getNumberArchs() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- getNumberArchs() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getNumberMeta() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getNumberNcbi() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getNumberRegions() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- getNumberSequences() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getNumberShuffledHits() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getNumberSpecies() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getNumberSpecies() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- getNumberSpecies() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getNumberStructures() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getNumberStructures() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- getNumberStructures() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getNumDistinctRegions() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getNumFull() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getNumProteins() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getNumSeed() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getNumTotalRegions() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getObserved() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getOcc() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Alink
-
Gets the value of the occ property.
- getOcc() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Amod
-
Gets the value of the occ property.
- getOcc() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Avariant
-
Gets the value of the occ property.
- getOcc() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dmod
-
Gets the value of the occ property.
- getOcc() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dvariant
-
Gets the value of the occ property.
- getOcc() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rmod
-
Gets the value of the occ property.
- getOcc() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rvariant
-
Gets the value of the occ property.
- getOffset() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDataType
-
Gets the value of the offset property.
- getOmim() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMAV
-
- getOmim() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCD
-
- getOmim() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCN
-
- getOmim() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- getOmim() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMED
-
- getOmim() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMRF
-
- getOmim() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMSA
-
- getOmim() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTI
-
- getOmim() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTX
-
- getOmim() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getOmimAVs() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getOMIMCDPK() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCD
-
- getOmimCDs() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getOMIMCNPK() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCN
-
- getOmimCNs() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getOMIMCount() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.controller.OMIMJpaController
-
- getOmimCS() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCSData
-
- getOmimCSDatas() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- getOmimCSs() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getOmimcsWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCSData
-
- getOMIMEDPK() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMED
-
- getOmimEDs() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getoMIMGeneMaps() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMethod
-
- getoMIMGeneMaps() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- getOmimId() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getOmimId() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- getoMIMMethods() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getoMIMMorbidMaps() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getOmimRFs() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getOmimSAs() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getOMIMTIPK() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTI
-
- getOmimTIs() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getOMIMTXPK() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTX
-
- getOmimTXs() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getOmimWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMAV
-
- getOmimWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCDPK
-
- getOmimWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCNPK
-
- getOmimWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- getOmimWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMEDPK
-
- getOmimWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMRF
-
- getOmimWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMSA
-
- getOmimWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTIPK
-
- getOmimWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTXPK
-
- getOntology() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getOntology() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeId
-
- getOntology() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonym
-
- getOntology() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsA
-
- getOntology() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMID
-
- getOntology() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelation
-
- getOntology() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsider
-
- getOntology() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getOntologyAlternativeId() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getOntologyAlternativeIdPK() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeId
-
- getOntologyCount() - Method in class org.jbiowh.core.datasets.ontology.jpa.controller.OntologyJpaController
-
- getOntologyhasOntologySynonym() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getOntologyhasOntologySynonym() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySynonym
-
- getOntologyhasOntologySynonymPK() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonym
-
- getOntologyIsA() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getOntologyIsAPK() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsA
-
- getOntologyLink(boolean, Collection<Ontology>) - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the Ontology action
- getOntologyPMID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getOntologyPMIDPK() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMID
-
- getOntologyRelation() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getOntologyRelationPK() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelation
-
- getOntologySubset() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getOntologySynonym() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonym
-
- getOntologySynonymCount() - Method in class org.jbiowh.core.datasets.ontology.jpa.controller.OntologySynonymJpaController
-
- getOntologySynonymWID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonymPK
-
- getOntologyToConsider() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getOntologyToConsiderPK() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsider
-
- getOntologyWID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeIdPK
-
- getOntologyWID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonymPK
-
- getOntologyWID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsAPK
-
- getOntologyWID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMIDPK
-
- getOntologyWID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelationPK
-
- getOntologyWID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsiderPK
-
- getOntologyXRef() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getOperation() - Method in class org.jbiowh.core.utility.constrains.JPLConstrains
-
Get the Operation over constrain
- getOrder() - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexColumn
-
Return the the column's order
- getOrderAdded() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferencesPK
-
- getOrderAdded() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferencesPK
-
- getOrderNumber() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumber
-
- getOrderNumber() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinName
-
- getOrg() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getOrg() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Gets the value of the org property.
- getOrganism() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- getORGANISMFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractorTags
-
- getORGANISMFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.OrganismTags
-
- getORGANISMHOSTFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.OrganismTags
-
- getOrganismsDiffer() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getORGANISMSDIFFERFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getORGANISMTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.OrganismTags
-
- getOrientation() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- getOrientation() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- getORIENTATIONFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SubCellularLocationTags
-
- getOriginal() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- getORIGINALFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.FeatureTags
-
- getOtherDesignations() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getOtherGeneInfoWID() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneGroupPK
-
- getOtherOntology() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelation
-
- getOtherOntologyWID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelationPK
-
- getOtherParams() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- getOtherParams() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- getOtherPfamAWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- getOtherWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- getOutput() - Method in class org.jbiowh.core.logger.VerbLogger
-
Return the PrintStream used to print the messages
- getPARAMETERFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterTags
-
- getPARAMETERLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterListTags
-
- getParentTaxId() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getParm() - Method in class org.jbiowh.core.dbms.sql.JPQLBuilder
-
- getParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipantPK
-
- getPARTICIPANTFEATUREREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InferredInteractionTags
-
- getPARTICIPANTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InferredInteractionTags
-
- getPARTICIPANTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- getPARTICIPANTIDENTIFICATIONMETHODFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentDescriptionTags
-
- getPARTICIPANTIDENTIFICATIONMETHODFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- getPARTICIPANTIDENTIFICATIONMETHODLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- getPARTICIPANTLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantListTags
-
- getPARTICIPANTREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InferredInteractionTags
-
- getParticipantType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipant
-
- getPartner() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- getPartner() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- getPartner() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- getPartner() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- getPartner() - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Drugs
-
- getPasswd() - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Return the MySQL DB password
- getPasswd() - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Return the MySQL DB password
- getPathInList() - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
- getPathInList(Collection<DefaultEdge>) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
- getPathToFile() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SourceFileType
-
Gets the value of the pathToFile property.
- getPatterList(BufferedReader, String) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMBasicParser
-
Get a list with all fields into a OMIM field
- getPdbEndIcode() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- getPdbId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- getPdbInsertCode() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getPdbRes() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getPdbResEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- getPdbResStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- getPdbSeqNumber() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getPdbStartIcode() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- getPeptide() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Protein
-
- getPeptideItem() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
Gets the value of the peptideItem property.
- getPercentageId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamInterpro
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- getPfamAacc() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamACount() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamAbioWHJpaController
-
- getPfamADatabaseLinkses() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamAhasPfamLiteratureReferences() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamAhasPfamLiteratureReferences() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- getPfamAhasPfamLiteratureReferencesPK() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- getPfamAid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamAInsignificant() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getPfamANCBIRegs() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamAPDBRegs() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getPfamArchitectureCount() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamArchitectureJpaController
-
- getPfamArchitectures() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamArchitectures() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getPfamARegFullInsignificant() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- getPfamARegFullInsignificantCount() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamARegFullInsignificantJpaController
-
- getPfamARegFullInsignificants() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamARegFullSignificant() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- getPfamARegFullSignificant() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- getPfamARegFullSignificantCount() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamARegFullSignificantJpaController
-
- getPfamARegFullSignificants() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamARegFullSignificantWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- getPfamARegSeed() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamARegSeedPK() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- getPfamASignificant() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getPfamAWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- getPfamAWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferencesPK
-
- getPfamAWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getPfamAWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getPfamAWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getPfamAWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeedPK
-
- getPfamAWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- getPfamAWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamInterpro
-
- getPfamAWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- getPfamAWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegionsPK
-
- getPfamB() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- getPfamBacc() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- getPfamBCount() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamBbioWHJpaController
-
- getPfamBid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- getPfamBRegs() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- getPfamBWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- getPfamClanDatabaseLinkses() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getPfamClans() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- getPfamClans() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- getPfamClansCount() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamClansJpaController
-
- getPfamClanses() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamClanses() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- getPfamClanshasPfamLiteratureReferences() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getPfamClanshasPfamLiteratureReferences() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- getPfamClanshasPfamLiteratureReferencesPK() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- getPfamClansWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- getPfamClansWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferencesPK
-
- getPfamCompleteProteomes() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- getPfamCompleteProteomesCount() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamCompleteProteomesJpaController
-
- getPfamCompleteProteomesWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegionsPK
-
- getPfamContextRegions() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamInterpros() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamLiteratureReferences() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- getPfamLiteratureReferences() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- getPfamLiteratureReferencesCount() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamLiteratureReferencesJpaController
-
- getPfamLiteratureReferencesWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferencesPK
-
- getPfamLiteratureReferencesWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferencesPK
-
- getPfamNestedLocationses() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamPDB() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getPfamPDBResidueDatas() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- getPfamPDBWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getPfamProteomeRegions() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamProteomeRegions() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getPfamProteomeRegionsCount() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamProteomeRegionsJpaController
-
- getPfamProteomeRegionsPK() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- getPfamSeqhasProtein() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getPfamSeqhasProtein() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getPfamSeqhasProteinPK() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- getPfamSeqhasUniProtId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- getPfamseqRes() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getPfamseqSeqNumber() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getPFrom() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- getPFrom() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- getpFrom() - Method in class org.jbiowh.tools.gene.PTTData
-
- getPharmacology() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getPI() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.TwoDimensionalIdentificationType
-
Gets the value of the pi property.
- getPid() - Method in class org.jbiowh.tools.gene.PTTData
-
- getPLength() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- getPLength() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- getPmid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- getPmid() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2PMIDPK
-
- getPmid() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMIDPK
-
- getPmid() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getPmid() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyPMIDPK
-
- getPosition() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- getPosition() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- getPosition() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- getPosition() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- getPosition() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- getPositionEnd() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getPOSITIONFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureRangeTags
-
- getPOSITIONFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.LocationTags
-
- getPositionStart() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getPositionStatus() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- getPOSITIONTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.LocationTags
-
- getPost() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- getPre() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- getPrecision() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PeakListBinaryType.Data
-
Gets the value of the precision property.
- getPrecursor() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getPrecursor() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- getPrecursor() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumDescType.PrecursorList
-
Gets the value of the precursor property.
- getPRECURSORFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SequenceTags
-
- getPrecursorList() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumDescType
-
Gets the value of the precursorList property.
- getPreferredSize() - Method in class org.jbiowh.gui.component.tree.TreeSchemaRenderer
-
- getPrevious() - Method in class org.jbiowh.core.datasets.gene.genome.utils.Chromosome
-
Return the previous gene to the current
- getPreviousId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPreviousId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getPreviousWID() - Method in class org.jbiowh.core.datasets.mainloader.entities.WidTable
-
Get the WidTable's previous Id
- getPrimaryRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getPrimaryRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getPrimaryRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getPrimaryRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getPrimaryRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getPRIMARYREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.XrefTags
-
- getPrintWriterFromName(String) - Method in class org.jbiowh.core.utility.utils.ParseFiles
-
Get the PrintWriter object fro the named file.
- getProcessingMethod() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.DataProcessingType
-
Gets the value of the processingMethod property.
- getProduct() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- getProduct() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankFeatures
-
- getProduct() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- getProduct() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- getProduct() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Reaction
-
Gets the value of the product property.
- getProduct() - Method in class org.jbiowh.tools.gene.PTTData
-
- getPROPERTYFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.DBReferenceTags
-
- getPROPERTYTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.DBReferenceTags
-
- getProtein() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getProtein() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getProtein() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- getProtein() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getProtein() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getProtein() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getProtein() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getProtein() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- getProtein() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumber
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCyc
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIP
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBank
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinEC
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntAct
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGG
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINT
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinName
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDB
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAM
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMID
-
- getProtein() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- getProteinAccession() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- getProteinAccession() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Ensembl
-
- getProteinAccession() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneRefSeqUniprotPK
-
- getProteinAccessionNumber() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinAccessionNumberPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumber
-
- getProteinAccessionVersion() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- getProteinAsCarriers() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getProteinAsEnzyme() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getProteinAsTransporters() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getProteinBinding() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getProteinBioCyc() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinBioCycPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCyc
-
- getProteinComment() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinComment() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- getProteinComment() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEvent
-
- getProteinComment() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- getProteinComment() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- getProteinComment() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLink
-
- getProteinComment() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- getProteinComment() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- getProteinCommentConflict() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getProteinCommentConflictPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- getProteinCommentEvent() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getProteinCommentEventPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEvent
-
- getProteinCommentInteract() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getProteinCommentInteractPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- getProteinCommentIsoform() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getProteinCommentIsoform() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformId
-
- getProteinCommentIsoform() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformName
-
- getProteinCommentIsoformWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformIdPK
-
- getProteinCommentIsoformWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformNamePK
-
- getProteinCommentLink() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getProteinCommentLinkPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLink
-
- getProteinCommentSubCellularLocation() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getProteinCommentWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflictPK
-
- getProteinCommentWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEventPK
-
- getProteinCommentWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteractPK
-
- getProteinCommentWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- getProteinCommentWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLinkPK
-
- getProteinCommentWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- getProteinCount() - Method in class org.jbiowh.core.datasets.protein.jpa.controller.ProteinJpaController
-
- getProteinDBReference() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinDBReference() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferenceProperty
-
- getProteinDBReferenceProperty() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- getProteinDBReferencePropertyPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferenceProperty
-
- getProteinDBReferenceWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferencePropertyPK
-
- getProteinDIP() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinDIPPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIP
-
- getProteinDrugBank() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinDrugBankPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBank
-
- getProteinEC() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinECPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinEC
-
- getPROTEINEXISTENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EntryTags
-
- getProteinFeature() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinFeature() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeatureVariation
-
- getProteinFeatureVariation() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- getProteinFeatureWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeatureVariation
-
- getProteinFirstAccessionNumber() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getPROTEINFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EntryTags
-
- getPROTEINFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getProteinFromId(List<String>) - Method in class org.jbiowh.core.datasets.protein.utils.ProteinFromOther
-
- getProteinFromId(String) - Method in class org.jbiowh.core.datasets.protein.utils.ProteinFromOther
-
- getProteinFromTaxonomy(String) - Method in class org.jbiowh.core.datasets.protein.utils.ProteinFromOther
-
Retrieve the proteins that belong the Taxonomy
- getProteinFromTaxonomy(List<Taxonomy>) - Method in class org.jbiowh.core.datasets.protein.utils.ProteinFromOther
-
Retrieve the proteins that belong the Taxonomy list
- getProteinFromTaxonomy(Taxonomy) - Method in class org.jbiowh.core.datasets.protein.utils.ProteinFromOther
-
Return the proteins that belong the Taxonomy
- getProteinGi() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- getProteinGi() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- getProteinGi() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- getProteinhasProteinKeyword() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinhasProteinKeyword() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKeyword
-
- getProteinhasProteinKeywordPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- getProteinId() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- getProteinId() - Method in class org.jbiowh.tools.gene.PTTData
-
- getProteinInsignificant() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getProteinIntAct() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinIntActPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntAct
-
- getProteinIsoformId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- getProteinIsoformIdPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformId
-
- getProteinIsoformName() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- getProteinIsoformNamePK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformName
-
- getProteinKEGG() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinKEGGPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGG
-
- getProteinKeyword() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- getProteinKeywordCount() - Method in class org.jbiowh.core.datasets.protein.jpa.controller.ProteinKeywordJpaController
-
- getProteinKeywordWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeywordPK
-
- getProteinLink(boolean, Object) - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the Protein action
- getProteinList() - Method in class org.jbiowh.core.utility.msms.MSData
-
Get the protein list extracted from the MS XML result file
- getProteinList() - Method in interface org.jbiowh.core.utility.msms.MSFactory
-
Get the protein list extracted from the MS XML result file
- getProteinLongName() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinLongNameDirected() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinMINT() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinMINTPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINT
-
- getProteinName() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinNameDef() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- getProteinNameDirected() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getPROTEINNAMEGROUPFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getProteinNamePK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinName
-
- getProteinOtherLocation() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getProteinPDB() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinPDBPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDB
-
- getProteinPFAM() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinPFAMPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAM
-
- getProteinPMID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinPMIDPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMID
-
- getProteinRefSeqPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeq
-
- getProteins() - Method in class org.jbiowh.core.datasets.protein.utils.ProteinFromOther
-
Return the list of founded proteins
- getProteinSignificant() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPROTEINTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProteinPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumberPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCycPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIPPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBankPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinECPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeywordPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntActPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGGPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINTPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinNamePK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDBPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAMPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMIDPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeqPK
-
- getProtocol() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType
-
Gets the value of the protocol property.
- getProtocolName() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.Protocol
-
Gets the value of the protocolName property.
- getProtocolSteps() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.Protocol
-
Gets the value of the protocolSteps property.
- getPTo() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- getPTo() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- getpTo() - Method in class org.jbiowh.tools.gene.PTTData
-
- getPTTFile() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- getPTTFile() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- getpTTFile() - Method in class org.jbiowh.tools.gene.PTTData
-
- getQuery() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.DbEntry
-
Gets the value of the query property.
- getQuery() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.File
-
Gets the value of the query property.
- getRank() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getrClass() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- getRClass() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- getReaction() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- getReaction() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Gets the value of the reaction property.
- getReaction() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Gets the value of the reaction property.
- getRECOMMENDEDNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getRedoAction() - Method in class org.jbiowh.gui.component.panel.sql.SQLEditorPanel
-
Get the Redo Action
- getRef() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- getReference() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getReference() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMRF
-
- getReference() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType
-
Gets the value of the reference property.
- getREFERENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ReferenceTags
-
- getREFFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.FeatureTags
-
- getREFFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.IsoformTags
-
- getREFFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getRefLine() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ReferenceType
-
Gets the value of the refLine property.
- getRefType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getRefType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getRefType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getRefType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getRefType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getRefTypeAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getRefTypeAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getRefTypeAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getRefTypeAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getRefTypeAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getREFTYPEACFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.XrefTags
-
- getREFTYPEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.XrefTags
-
- getRegionId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- getRelation() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Gets the value of the relation property.
- getRelationship() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneGroupPK
-
- getRELATIONSHIP() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the RELATIONSHIP Tags
- getReleaseDate() - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Get the DataSet's release date
- getReleaseDate() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getRELEASEDATEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.SourceTags
-
- getRELEASEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.SourceTags
-
- getReleaseValue() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getRemark() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getRemark() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getRemark() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getResidueCoverage() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getResolution() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- getResource() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- getResource() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- getRESOURCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ConflictTags
-
- getResult() - Method in class org.jbiowh.core.utility.utils.SavedResults
-
Get the result map
- getResult(String) - Method in class org.jbiowh.core.utility.utils.SavedResults
-
Get the result object at index index
- getResultPanel() - Method in class org.jbiowh.gui.component.panel.result.ResultPanelFactory
-
Get the Result Panel
- getRNANucleotideAccession() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- getrNANucleotideAccession() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Ensembl
-
- getRNANucleotideAccession() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Ensembl
-
- getRNANucleotideAccessionVersion() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- getRNANucleotideGi() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- getRoute() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- getRouteOfElimination() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getRowCount() - Method in class org.jbiowh.gui.component.table.model.ConstrainsTableModel
-
- getRowCount() - Method in class org.jbiowh.gui.component.table.model.CreateTableColumnModel
-
- getRowCount() - Method in class org.jbiowh.gui.component.table.model.CreateTableIndexModel
-
- getRowCount() - Method in class org.jbiowh.gui.component.table.model.CreateTableModel
-
- getRowCount() - Method in class org.jbiowh.gui.component.table.model.ExtendedListTableModel
-
- getRowCount() - Method in class org.jbiowh.gui.component.table.model.ListTableModel
-
- getRt() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- getSa() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMSA
-
- getSampleDescription() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.AdminType
-
Gets the value of the sampleDescription property.
- getSampleName() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.AdminType
-
Gets the value of the sampleName property.
- getSchema(String) - Method in class org.jbiowh.core.dbms.WHDBMS
-
Return the WHDBMSFactory from its URL
- getSchemas() - Method in class org.jbiowh.core.dbms.WHDBMS
-
Return the opened schemas
- getScope() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonymPK
-
- getSCOPE() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the SCOPE Tags
- getScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- getScore() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
Gets the value of the score property.
- getscrollCount() - Method in class org.jbiowh.gui.component.popup.MenuScroller
-
Returns the number of items in the scrolling portion of the menu.
- getSearchEngine() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
Gets the value of the searchEngine property.
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.disease.omim.search.SearchOMIM
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.domain.pfam.search.SearchPFam
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.drug.drugbank.search.SearchDrugBank
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.gene.gene.search.SearchGeneInfo
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.gene.genebank.search.SearchGeneBank
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.gene.genome.search.SearchGenePTT
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.ontology.search.SearchOntology
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGCompound
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGlycan
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGPathway
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGReaction
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.protclust.search.SearchUniRef
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.protein.search.SearchProtein
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.taxonomy.search.SearchTaxonomy
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Get the main entity class
- getSearchMethod() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getSecondary() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getSecondary() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getSecondary() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getSecondary() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getSecondary() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getSECONDARYFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.XrefTags
-
- getSECONDARYREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.XrefTags
-
- getSeedConsensus() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getSeedSource() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getSelectedElements() - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Get the list with the selected elements
- getSeq() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- getSeq() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getSeq() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- getSeq() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- getSeq() - Method in class org.jbiowh.core.utility.fileformats.fasta.FastaEntry
-
Get the sequence
- getSeqEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getSeqEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- getSeqEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getSeqEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getSeqEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- getSeqEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- getSeqEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- getSeqEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- getSeqEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- getSeqID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- getSeqLengh() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- getSeqLength() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getSeqModified() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getSeqRef() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- getSeqResource() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- getSeqStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getSeqStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- getSeqStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getSeqStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getSeqStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- getSeqStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- getSeqStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- getSeqStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- getSeqStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- getSeqType() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- getSequence() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getSequence() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- getSequence() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Peptide
-
Gets the value of the sequence property.
- getSequenceBitsScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getSequenceBitsScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getSequenceBitsScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getSequenceCoverage() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getSequenceCoverage() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
Gets the value of the sequenceCoverage property.
- getSequenceEvalueScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getSequenceEvalueScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getSequenceEvalueScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getSEQUENCEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractorTags
-
- getSEQUENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ConflictTags
-
- getSEQUENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.IsoformTags
-
- getSEQUENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.LocationTags
-
- getSEQUENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SequenceTags
-
- getSequenceGA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getSequenceNC() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getSequenceTC() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getSeqVersion() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- getSeqVersion() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getSeqVersion() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- getSerial() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantBiologicalRole
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Names
-
Get the shortLabel value
- getShortLabel() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType
-
Gets the value of the shortLabel property.
- getSHORTLABELFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.NamesTags
-
- getSHORTNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getSoftware() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.DataProcessingType
-
Gets the value of the software property.
- getSource() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- getSource() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- getSource() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- getSource() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.InstrumentDescriptionType
-
Gets the value of the source property.
- getSourceFile() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.AdminType
-
Gets the value of the sourceFile property.
- getSOURCEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.SourceTags
-
- getSourceId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- getSpecies() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getSpectrum() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.MzData.SpectrumList
-
Gets the value of the spectrum property.
- getSpectrumDesc() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumType
-
Gets the value of the spectrumDesc property.
- getSpectrumInstrument() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType
-
Gets the value of the spectrumInstrument property.
- getSpectrumList() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.MzData
-
Gets the value of the spectrumList property.
- getSpectrumRef() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PrecursorType
-
Gets the value of the spectrumRef property.
- getSpectrumReference() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
Gets the value of the spectrumReference property.
- getSpectrumReference() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Peptide
-
Gets the value of the spectrumReference property.
- getSpectrumSettings() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumDescType
-
Gets the value of the spectrumSettings property.
- getSpectrumType() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType.AcqSpecification
-
Gets the value of the spectrumType property.
- getSpliceIsoform() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
Gets the value of the spliceIsoform property.
- getSqlFormat() - Method in class org.jbiowh.gui.sqltables.CreateTable
-
- getSQLFunctionsAndOperators() - Method in class org.jbiowh.gui.component.panel.sql.syntax.SQLFunctionsAndOperators
-
Get the SQL Functions and Operators
- getSQLReservedWords() - Method in class org.jbiowh.gui.component.panel.sql.syntax.SQLReservedWords
-
Get the SQL Reserved Words
- getSQLSelection() - Method in class org.jbiowh.gui.component.panel.sql.SQLEditorPanel
-
Get the SQL sentences under selection
- getSQLSpecialChars() - Method in class org.jbiowh.gui.component.panel.sql.syntax.SQLSpecialChar
-
Get the SQL special characters
- getsQLTableViewPanel() - Method in class org.jbiowh.gui.component.panel.result.ResultPanelFactory
-
Get the SQL Table view panel
- getStart() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- getStart() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
Gets the value of the start property.
- getStart() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dna
-
Gets the value of the start property.
- getStart() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Domain
-
Gets the value of the start property.
- getStart() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Exon
-
Gets the value of the start property.
- getStart() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Gene
-
Gets the value of the start property.
- getStart() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Intron
-
Gets the value of the start property.
- getStart() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Locus
-
Gets the value of the start property.
- getStart() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Peptide
-
Gets the value of the start property.
- getStart() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Promotor
-
Gets the value of the start property.
- getStart() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rdomain
-
Gets the value of the start property.
- getStart() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rna
-
Gets the value of the start property.
- getStart() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.StsDomain
-
Gets the value of the start property.
- getStart() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Peptide
-
Gets the value of the start property.
- getStartFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getStartPositionOnTheGenomicAccession() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- getStartShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getSTARTSTATUSFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureRangeTags
-
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aa
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aconflict
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Alink
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Amod
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Author
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Avariant
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Binary
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.BookTitle
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Cell
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Chromosome
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Clone
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.CommonName
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Copyright
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Da
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Data
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.DbEntry
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dmod
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dna
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Domain
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dstart
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dstop
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dvariant
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Editor
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Exon
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.File
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Form
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Gene
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Homolog
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Input
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Intron
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Journal
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Locus
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Name
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Note
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Organelle
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Organism
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Pages
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Particle
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Peptide
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Plasmid
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Promotor
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Protein
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ra
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rdomain
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Reference
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rmod
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rna
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rstart
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rstop
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rvariant
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Species
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.StsDomain
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Subunit
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Taxon
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Text
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Tissue
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Title
-
Gets the value of the state property.
- getState() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Volume
-
Gets the value of the state property.
- getStatus() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- getStatus() - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Get the DataSet's status
- getStatus() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- getStatus() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- getStatus() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- getStatus() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- getStatus() - Method in class org.jbiowh.core.datasets.protein.parser.xml.EvidencedStringType
-
- getSTATUS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EvidencedStringTypeTags
-
- getSTATUSFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getSTATUSFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.FeatureTags
-
- getSTATUSFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.GeneLocationTags
-
- getSTATUSFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.LocationTags
-
- getStepDescription() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.Protocol.ProtocolSteps
-
Gets the value of the stepDescription property.
- getStrand() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- getStrand() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- getStrength() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- getString() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDataType
-
Gets the value of the string property.
- getSUBCELLULARLOCATIONFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SubCellularLocationTags
-
- getSUBCELLULARLOCATIONTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SubCellularLocationTags
-
- getSUBMITTEDNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getSUBSET() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the SUBSET Tags
- getSUBSETDEF() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOHeaderTags
-
Get the SUBSETDEF tag
- getSubstrate() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Reaction
-
Gets the value of the substrate property.
- getSubstructure() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- getSubtype() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Relation
-
Gets the value of the subtype property.
- getSumI() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- getSumI() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Protein
-
- getSupDataArrayBinaryOrSupDataArray() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumType
-
Gets the value of the supDataArrayBinaryOrSupDataArray property.
- getSupDataArrayRef() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDescType
-
Gets the value of the supDataArrayRef property.
- getSupDataDesc() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDescType
-
Gets the value of the supDataDesc property.
- getSupDesc() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumType
-
Gets the value of the supDesc property.
- getSupSourceFile() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDescType
-
Gets the value of the supSourceFile property.
- getSymbol() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getSymbolFromNomenclature() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getSynonym() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSynonyms
-
- getSynonym() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySynonym
-
- getSYNONYM() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the SYNONYM Tags
- getSynonym() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getSynonym() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonymPK
-
- getSynonyms() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoSynonymsPK
-
- getSYNONYMTEXT() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the SYNONYMTEXT Tags
- getSynthesisRef() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getSySName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- getTables() - Method in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
Return the OMIM's tables names in a list
- getTables() - Method in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
Return the Map object with the tables names and TSV files names
- getTables() - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
Return the Drugbank's tables names in a list
- getTables() - Method in class org.jbiowh.core.datasets.gene.gene.parser.GeneTables
-
Return the Map object with the tables names and TSV files names
- getTables() - Method in class org.jbiowh.core.datasets.gene.genebank.parser.GeneBankTables
-
Return the Map object with the tables names and TSV files names
- getTables() - Method in class org.jbiowh.core.datasets.gene.genome.parser.GenePTTTables
-
Return the Map object with the tables names and TSV files names
- getTables() - Method in class org.jbiowh.core.datasets.mainloader.DataSetsTables
-
Return a list object with the tables names
- getTables() - Method in class org.jbiowh.core.datasets.ontology.parser.OntologyTables
-
Return the Map object with the tables names and TSV files names
- getTables() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
Return the Map object with the tables names and TSV files names
- getTables() - Method in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
Return the Map object with the tables names and TSV files names
- getTables() - Method in class org.jbiowh.core.datasets.protclust.parser.UniRefTables
-
Return the Map object with the tables names and TSV files names
- getTables() - Method in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
Return the Map object with the tables names and TSV files names
- getTables() - Method in class org.jbiowh.core.datasets.taxonomy.parser.TaxonomyTables
-
Return the Map object with the tables names and TSV files names
- getTablesOnSchema() - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
- getTablesOnSchema() - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Return the tables with its fields
- getTag() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTXPK
-
- getTagname() - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.DrugBankDefaultHandler
-
- getTagname() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.GOOntologyDefaultHandler
-
- getTags() - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.MultipleFieldXMLParser
-
- getTaxId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getTaxID() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getTaxId() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- getTaxId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getTaxId() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- getTaxId() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- getTaxId() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getTaxonomy() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getTaxonomy() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getTaxonomy() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- getTaxonomy() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- getTaxonomy() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- getTaxonomy() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getTaxonomy() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getTaxonomy() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- getTaxonomy() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- getTaxonomy() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getTaxonomy() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyPMID
-
- getTaxonomy() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonym
-
- getTaxonomyCount() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.controller.TaxonomyJpaController
-
- getTaxonomyDivisionWID() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getTaxonomyGenCodeWID() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getTaxonomyHost() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getTaxonomyMCGenCodeWID() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getTaxonomyPMIDPK() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyPMID
-
- getTaxonomySynonym() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
Get the scientific name for this Taxonomy
- getTaxonomySynonym(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getTaxonomySynonymNameClassWID() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonymPK
-
- getTaxonomySynonymPK() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonym
-
- getTaxonomyWID() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyPMIDPK
-
- getTaxonomyWID() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonymPK
-
- getTempdir() - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Return the temporal directory use to parse the data source
- getTerm() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.GO
-
- getTERM() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the TERM Tags
- getTerm() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getTermAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameterPK
-
- getTERMACFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterTags
-
- getTERMFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterTags
-
- getText() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getText() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyUnParseCitation
-
- getTextEvidence() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getTEXTFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getTextStatus() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getThreshold() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
Gets the value of the threshold property.
- getTi() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTIPK
-
- getTime() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDataType
-
Gets the value of the time property.
- getTISSUEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.BioSourceTypeTags
-
- getTitle() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getTitle() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- getTitle() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- getTitle() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getTitle() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Gets the value of the title property.
- getTitle() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType
-
Gets the value of the title property.
- getTO() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the TO Tags
- getTo() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aa
-
Gets the value of the to property.
- getTo() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Alink
-
Gets the value of the to property.
- getTo() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Amod
-
Gets the value of the to property.
- getToConsiderOntology() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsider
-
- getToConsiderOntologyWID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsiderPK
-
- getTopFixedCount() - Method in class org.jbiowh.gui.component.popup.MenuScroller
-
Returns the number of items fixed at the top of the menu or popup menu.
- getTOPOLOGYFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SubCellularLocationTags
-
- getTotalAaCovered() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getTotalAaLength() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getTotalGenomeProteins() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getTotalSeqsCovered() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getToxicity() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.jbiowh.gui.component.tree.TreeSchemaRenderer
-
- getTreeOrder() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getTreeOrder() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getTreeOrder() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeedPK
-
- getTwoDimensionalIdentification() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType
-
Gets the value of the twoDimensionalIdentification property.
- getTx() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getTx() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTX
-
- getTx() - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMTXParser
-
Get the OMIM TX first line before any TAGS
- getTxtData(Object) - Method in class org.jbiowh.gui.datasets.EntityParserFieldProxy
-
Get the fields to be printed in txt format for each Dataset
- getTxtDataFromCollection(Collection) - Method in class org.jbiowh.gui.datasets.EntityParserFieldProxy
-
Get a list with all fields to be printed from a Dataset collection
- getType() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getType() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getType() - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Return the data source type
- getType() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelation
-
- getType() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- getTYPE() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the TYPE Tags
- getType() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- getType() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- getType() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getType() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- getType() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- getType() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Gets the value of the type property.
- getType() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Gets the value of the type property.
- getType() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Reaction
-
Gets the value of the type property.
- getType() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Relation
-
Gets the value of the type property.
- getType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getType() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntryProperty
-
- getType() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- getType() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMemberProperty
-
- getType() - Method in class org.jbiowh.core.datasets.protclust.parser.xml.Property
-
- getType() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getType() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflictPK
-
- getType() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- getType() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- getType() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- getType() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- getType() - Method in class org.jbiowh.core.datasets.protein.parser.xml.DBReference
-
- getType() - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Get the column's type
- getType() - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Return the index's type
- getType() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aa
-
Gets the value of the type property.
- getType() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aconflict
-
Gets the value of the type property.
- getType() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Alink
-
Gets the value of the type property.
- getType() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Amod
-
Gets the value of the type property.
- getType() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Avariant
-
Gets the value of the type property.
- getType() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Da
-
Gets the value of the type property.
- getType() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dmod
-
Gets the value of the type property.
- getType() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Domain
-
Gets the value of the type property.
- getType() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dvariant
-
Gets the value of the type property.
- getType() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- getType() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Input
-
Gets the value of the type property.
- getType() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Note
-
- getType() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ra
-
Gets the value of the type property.
- getType() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rmod
-
Gets the value of the type property.
- getType() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rvariant
-
Gets the value of the type property.
- getTypeAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getTYPEACFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.NamesTags
-
- getTypeExample() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- getTYPEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.NamesTags
-
- getTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ConflictTags
-
- getTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.DBReferenceTags
-
- getTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EntryTags
-
- getTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.FeatureTags
-
- getTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.GeneLocationTags
-
- getTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.GeneTags
-
- getTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.IsoformTags
-
- getTypeId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- getTypeOfGene() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getTypes() - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
Return the class types for each column
- getUid() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Protein
-
- getUncertainty() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getUNCERTAINTYFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterTags
-
- getUndoAction() - Method in class org.jbiowh.gui.component.panel.sql.SQLEditorPanel
-
Get the Undo Action
- getUniGene() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2UniGenePK
-
- getUNIPROT() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EntryTags
-
- getUniProtId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasUniProtId
-
- getUniProtKBProteinAccession() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneRefSeqUniprotPK
-
- getUniqueKey() - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the unique UUID for this object
- getUniqueKey() - Method in class org.jbiowh.gui.component.panel.ConstrainPanel
-
- getUniqueKey() - Method in class org.jbiowh.gui.component.panel.HomePanel
-
Return the unique Id for this object
- getUniqueKey() - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Return the unique Id for this object
- getUniqueKey() - Method in class org.jbiowh.gui.component.panel.SearchPanel
-
- getUniqueKey() - Method in class org.jbiowh.gui.component.panel.sql.SQLBrowsePanel
-
Return the unique Id for this object
- getUniqueKey() - Method in class org.jbiowh.gui.component.panel.sql.SQLEditorPanel
-
Return the unique Id for this object
- getUniref() - Method in class org.jbiowh.core.datasets.protclust.parser.xml.UniRef
-
- getUniRefEntry() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntryProperty
-
- getUniRefEntry() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- getUniRefEntry() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getUniRefEntryCount() - Method in class org.jbiowh.core.datasets.protclust.jpa.controller.UniRefEntryJpaController
-
- getUniRefEntryProperty() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- getUniRefEntryWID() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntryProperty
-
- getUniRefEntryWID() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- getUniRefMember() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- getUniRefMember() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMemberProperty
-
- getUniRefMember() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getUniRefMemberCount() - Method in class org.jbiowh.core.datasets.protclust.jpa.controller.UniRefMemberJpaController
-
- getUniRefMemberProperty() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- getUniRefMemberWID() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMemberProperty
-
- getUniSTSID() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2STSPK
-
- getUnit() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- getUnit() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getUnitAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getUNITACFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterTags
-
- getUNITFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ConfidenceTags
-
- getUNITFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterTags
-
- getUnparse() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getUpdated() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getUpdated() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getUpdated() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getUpdated() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- getUri() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLinkPK
-
- getURI() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDataType
-
Gets the value of the uri property.
- getURIFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getUrl() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- getUrl() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- getUrl() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyUnParseCitation
-
- getUrl() - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Return the MySQL DB URL
- getUrl() - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Return the MySQL DB URL
- getUrl() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.DbEntry
-
Gets the value of the url property.
- getUrl() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.File
-
Gets the value of the url property.
- getUrl() - Method in class org.jbiowh.gui.OpenWHDB
-
Return the URL opened
- getUser() - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Return the MySQL DB user
- getUser() - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Return the MySQL DB user
- getVallue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Input
-
Gets the value of the vallue property.
- getValue() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- getValue() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- getValue() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubTypePK
-
- getValue() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Subtype
-
Gets the value of the value property.
- getValue() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntryProperty
-
- getValue() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMemberProperty
-
- getValue() - Method in class org.jbiowh.core.datasets.protclust.parser.xml.Property
-
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aa
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aconflict
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Alink
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Amod
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Author
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Avariant
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Binary
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.BookTitle
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Cell
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Chromosome
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Clone
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.CommonName
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Copyright
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Da
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Data
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.DbEntry
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dmod
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dna
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Domain
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dstart
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dstop
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dvariant
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Editor
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Exon
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.File
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Form
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Gene
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Homolog
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Input
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Intron
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Journal
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Locus
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Name
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Note
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Organelle
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Organism
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Pages
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Particle
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Plasmid
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Promotor
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ra
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rdomain
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Reference
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rmod
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rna
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rstart
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rstop
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rvariant
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Species
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.StsDomain
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Subunit
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Taxon
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Text
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Tissue
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Title
-
Gets the value of the value property.
- getvalue() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Volume
-
Gets the value of the value property.
- getValue() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.CvParamType
-
Gets the value of the value property.
- getValue() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PeakListBinaryType.Data
-
Gets the value of the value property.
- getValue() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.UserParamType
-
Gets the value of the value property.
- getValueAt(int, int) - Method in class org.jbiowh.gui.component.table.model.ConstrainsTableModel
-
- getValueAt(int, int) - Method in class org.jbiowh.gui.component.table.model.CreateTableColumnModel
-
- getValueAt(int, int) - Method in class org.jbiowh.gui.component.table.model.CreateTableIndexModel
-
- getValueAt(int, int) - Method in class org.jbiowh.gui.component.table.model.CreateTableModel
-
- getValueAt(int, int) - Method in class org.jbiowh.gui.component.table.model.ExtendedListTableModel
-
- getValueAt(int, int) - Method in class org.jbiowh.gui.component.table.model.ListTableModel
-
- getVALUEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ConfidenceTags
-
- getVALUEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.DBReferenceTags
-
- getValueVal() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getVariation() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeatureVariation
-
- getVARIATIONFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.FeatureTags
-
- getVersion() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getVersion() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getVersion() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getVersion() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- getVersion() - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Get the the DataSet's version
- getVersion() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- getVersion() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getVersion() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getVersion() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getVersion() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getVersion() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getVersion() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getVersion() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- getVERSION() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EntryTags
-
- getVersion() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.CvLookupType
-
Gets the value of the version property.
- getVersion() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentCollection
-
Gets the value of the version property.
- getVersion() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.MzData
-
Gets the value of the version property.
- getVersion() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SoftwareType
-
Gets the value of the version property.
- getVERSIONFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.EntrySetTags
-
- getVERSIONFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.XrefTags
-
- getVERSIONFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ConflictTags
-
- getVERSIONFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SequenceTags
-
- getVertexToCellMap() - Method in class org.jbiowh.core.utility.graph.JGraphXAdapter
-
Return a map with the vertexes and mxCell
- getViterbiLambda() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getViterbiMu() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getVolumeOfDistribution() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getWeightObject() - Method in class org.jbiowh.core.utility.graph.edge.HideWeightedEdge
-
- getWhdbmsFactory() - Method in class org.jbiowh.core.dbms.WHDBMS
-
Return the DBMS Factory
- getWhdbmsFactory() - Method in class org.jbiowh.tools.defaultTools.AbstractDefaultTool
-
Return the WHDBMS factory
- getWHEntityManager() - Method in class org.jbiowh.core.dbms.WHDBMS
-
Return the Persistence EntityManagerFactory
- getWHEntityManager(WHDBMSFactory) - Method in class org.jbiowh.core.dbms.WHDBMS
-
Return the Persistence EntityManagerFactory for a WHDBMS factory
Create the connection if the EntityManagerFactory does not exist
- getWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMAV
-
- getWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- getWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCSData
-
- getWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMethod
-
- getWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- getWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMRF
-
- getWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMSA
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamMarkupKey
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqDisulphide
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAffectedOrganisms
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAHFSCodes
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankATCCodes
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankBrands
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersActions
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCategories
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesActions
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankFoodInteractions
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGroup
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSecondAccessionNumbers
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSynonyms
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsActions
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomy
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersActions
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- getWid() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2AccessionPK
-
- getWid() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Ensembl
-
- getWid() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- getWid() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- getWid() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- getWid() - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- getWid() - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Get the DataSet's Id
- getWid() - Method in class org.jbiowh.core.datasets.mainloader.entities.WidTable
-
Get the WidTable's Id
- getWid() - Method in class org.jbiowh.core.datasets.mainloader.WIDFactory
-
Return the WID value
- getWid() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getWid() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySubset
-
- getWid() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySynonym
-
- getWid() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeClass
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanClass
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantBiologicalRole
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getWID() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.OpenCvType
-
- getWid() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- getWid() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntryProperty
-
- getWid() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- getWid() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMemberProperty
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteractPK
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeatureVariation
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKeyword
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- getWid() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getWid() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyDivision
-
- getWid() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- getWid() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonymNameClass
-
- getWid() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyUnParseCitation
-
- getWID(Object) - Method in class org.jbiowh.gui.datasets.EntityParserFieldProxy
-
Get the WID for each DataSet entity
- getWIDFromDataBase() - Method in class org.jbiowh.core.datasets.mainloader.WIDFactory
-
Retrieve the WID entity from the database
- getWidTableCount() - Method in class org.jbiowh.core.datasets.mainloader.controller.WidTableJpaController
-
Count all WidTable entities objects
- getWidth() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getWidth() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Gets the value of the width property.
- getWidth() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Input
-
Gets the value of the width property.
- getX() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getX() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Gets the value of the x property.
- getXCoordinate() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Point
-
Gets the value of the xCoordinate property.
- getXmlSpace() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Author
-
Gets the value of the xmlSpace property.
- getXmlSpace() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.BookTitle
-
Gets the value of the xmlSpace property.
- getXmlSpace() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.CommonName
-
Gets the value of the xmlSpace property.
- getXmlSpace() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Editor
-
Gets the value of the xmlSpace property.
- getXmlSpace() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Journal
-
Gets the value of the xmlSpace property.
- getXmlSpace() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Name
-
Gets the value of the xmlSpace property.
- getXmlSpace() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Note
-
Gets the value of the xmlSpace property.
- getXmlSpace() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Pages
-
Gets the value of the xmlSpace property.
- getXmlSpace() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Reference
-
Gets the value of the xmlSpace property.
- getXmlSpace() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Species
-
Gets the value of the xmlSpace property.
- getXmlSpace() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Taxon
-
Gets the value of the xmlSpace property.
- getXmlSpace() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Title
-
Gets the value of the xmlSpace property.
- getXmlSpace() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Volume
-
Gets the value of the xmlSpace property.
- getXREFANALOG() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the XREFANALOG Tags
- getXREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.XrefTags
-
- getXsdfiledef() - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Return the Xsdfiledef parameter
- getY() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getY() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Gets the value of the y property.
- getY_ions() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- getY_score() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- getYCoordinate() - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Point
-
Gets the value of the yCoordinate property.
- getYear() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getZ() - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- GI - Variable in class org.jbiowh.core.datasets.gene.genebank.search.SearchGeneBank
-
- GO - Class in org.jbiowh.core.datasets.ontology.parser.xml
-
This Class is the GO starting class for the SAX parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- GO() - Constructor for class org.jbiowh.core.datasets.ontology.parser.xml.GO
-
- GOCommonTags - Class in org.jbiowh.core.datasets.ontology.parser.xml.tags
-
This Class storage the GO-Ontology common XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- GOCommonTags() - Constructor for class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOCommonTags
-
- GOHeader - Class in org.jbiowh.core.datasets.ontology.parser.xml
-
This Class handled the HEADER XML Tag on the GO Ontology XML OBO file
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- GOHeader() - Constructor for class org.jbiowh.core.datasets.ontology.parser.xml.GOHeader
-
This constructor initialize the WH file manager and the WH DataSet
manager
- GOHeaderTags - Class in org.jbiowh.core.datasets.ontology.parser.xml.tags
-
This Class storage the GO-Ontology XML Header Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- GOHeaderTags() - Constructor for class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOHeaderTags
-
- GOOntologyDefaultHandler - Class in org.jbiowh.core.datasets.ontology.parser.xml
-
This Class acts as DefaultHandler for the Ontology SaX Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- GOOntologyDefaultHandler(GO) - Constructor for class org.jbiowh.core.datasets.ontology.parser.xml.GOOntologyDefaultHandler
-
- GOTerm - Class in org.jbiowh.core.datasets.ontology.parser.xml
-
This Class is the Go Term XML Sax parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- GOTerm() - Constructor for class org.jbiowh.core.datasets.ontology.parser.xml.GOTerm
-
This constructor initialize the WH file manager and the WH DataSet
manager
- GOTermTags - Class in org.jbiowh.core.datasets.ontology.parser.xml.tags
-
This Class storage the GO-Ontology XML Term Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- GOTermTags() - Constructor for class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
- graph - Variable in class org.jbiowh.core.utility.graph.JBioWHGraph
-
The graph object
- graph() - Method in class org.jbiowh.tools.examples.PPIGraph
-
- graphAnal() - Method in class org.jbiowh.tools.examples.DrugNeighbors
-
- graphAnal() - Method in class org.jbiowh.tools.examples.DrugProteinPathwayGraph
-
- GraphFrame - Class in org.jbiowh.tools.examples
-
This frame is used to visualize graphs
- GraphFrame(ListenableGraph) - Constructor for class org.jbiowh.tools.examples.GraphFrame
-
Creates new form GraphFrame
- graphics - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
- Graphics - Class in org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml
-
This is the Graphics XML parser from JAXB for KGML file format
- Graphics() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
- GROUP - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.GroupsTags
-
- group - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Bioml
-
- Group - Class in org.jbiowh.core.utility.fileformats.bioml.xml
-
The Group XML class
- Group() - Constructor for class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- group - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- GROUPS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.GroupsTags
-
- GroupsTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the Groups XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- PACKAGER - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PackagersTags
-
- PACKAGERS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PackagersTags
-
- PackagersTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the Packagers XML tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- Pages - Class in org.jbiowh.core.utility.fileformats.bioml.xml
-
- Pages() - Constructor for class org.jbiowh.core.utility.fileformats.bioml.xml.Pages
-
- Parameter - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class handled the XML Parameter Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Parameter() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.Parameter
-
This constructor initialize the WH file manager and the WH DataSet
manager
- ParameterList - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class handled the XML ParameterList Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ParameterList() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.ParameterList
-
This constructor initialize the WH file manager and the WH DataSet
manager
- ParameterListTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class storage the XML ParameterList Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ParameterListTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterListTags
-
- ParameterTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class storage the XML Parameter Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ParameterTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterTags
-
- ParamType - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
Structure allowing the use of controlled or uncontrolled vocabulary
- ParamType() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.ParamType
-
- parentComponent - Variable in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
The parent JComponent
- parentComponent - Variable in class org.jbiowh.gui.component.panel.list.AbstractListView
-
- parentComponent - Variable in class org.jbiowh.gui.component.popup.BasicPopup
-
The parent component for this popup
- parse(BufferedReader, long) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMAVParser
-
Get the OMIMAV object parsing the OMIM txt file
- parse(BufferedReader, long) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMCDParser
-
Get the OMIMCD object parsing the OMIM txt file
- parse(BufferedReader, long) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMCNParser
-
Get the OMIMCN object parsing the OMIM txt file
- parse(BufferedReader, long) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMCSParser
-
Get the OMIMCS object parsing the OMIM txt file
- parse(BufferedReader, long) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMEDParser
-
Get the OMIMED object parsing the OMIM txt file
- parse(BufferedReader, Long) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMRFParser
-
Get the OMIMRF object parsing the OMIM txt file
- parse(BufferedReader, long) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMSAParser
-
Get the OMIMSA object parsing the OMIM txt file
- parse(BufferedReader, long) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMTIParser
-
Get the OMIMTI object parsing the OMIM txt file
- parse(BufferedReader, long) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMTXParser
-
Get the OMIMTX object parsing the OMIM txt file
- parseDefaultOptions(OptionParser, String[], boolean) - Method in class org.jbiowh.tools.defaultTools.AbstractDefaultTool
-
Method to parse the command line arguments
- ParseFactory - Interface in org.jbiowh.core.datasets.mainloader
-
This interface is the Parse Factory to parse any data source
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ParseFiles - Class in org.jbiowh.core.utility.utils
-
This Class is handled the TSV files to parse data sources
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-19 09:38:47 +0100
(Tue, 19 Mar 2013) $ $LastChangedRevision: 591 $
- parseOption(OptionSet, String, Object, boolean, boolean) - Method in class org.jbiowh.tools.defaultTools.AbstractDefaultTool
-
Parse the command line option
- parseOptions(String[]) - Method in class org.jbiowh.core.datasets.mainloader.DataSetLoader
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.dataset.DataSetReport
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.defaultTools.AbstractDefaultTool
-
This method parse the command line arguments with the JBioWH options
- parseOptions(String[]) - Method in class org.jbiowh.tools.examples.AntibioticGeneNeighbors
-
Method to parse the command line arguments
- parseOptions(String[]) - Method in class org.jbiowh.tools.examples.AntibioticGeneNeighborTax
-
Method to parse the command line arguments
- parseOptions(String[]) - Method in class org.jbiowh.tools.examples.DrugNeighbors
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.examples.DrugProteinPathwayGraph
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.examples.FindALLHumProt
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.examples.FindALLHumProtinGO
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.examples.FindALLHumProtinGOwithConst
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.examples.FindGenefromDrug
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.examples.FrecPathGeneNeighbors
-
Method to parse the command line arguments
- parseOptions(String[]) - Method in class org.jbiowh.tools.examples.PPIGraph
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.fileformats.BiomlParser
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.fileformats.ExtractGiFromFasta
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.fileformats.PrideXMLParser
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.fileformats.ReformatFasta
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.gene.FindGenefromProteinGi
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.gene.GenesDrugsFromTaxonomyFamily
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.gene.GenomeDataFromTaxGraph
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.genebank.FindGeneBankFlat
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.genebank.FindGeneBankTax
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.genebank.FindGeneFromGeneBankPos
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.genebank.FindonGeneBankperTaxFamily
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.genebank.FindOnRefSeqFlat
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.msms.MSParserTool
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.protein.FindProtein
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.protein.FindProteinFromTaxonomy
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.prototypes.insert.InsertDBToDB
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.prototypes.temp.Test
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.taxonomy.CreateTaxonomyTree
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.taxonomy.FindTaxonomyGraph
-
- parseXML(File, EntityManagerFactory) - Method in class org.jbiowh.core.utility.msms.modules.MSBioMLParser
-
- parseXML(File, EntityManagerFactory) - Method in class org.jbiowh.core.utility.msms.modules.MSPrideParser
-
- parseXML(File, EntityManagerFactory) - Method in interface org.jbiowh.core.utility.msms.MSFactory
-
Parse the XML file and search the proteins using the EntityManagerFactory
- Participant - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class handled the XML Participant Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Participant() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.Participant
-
This constructor initialize the WH file manager and the WH DataSet
manager
- ParticipantList - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ParticipantList() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.ParticipantList
-
This constructor initialize the WH file manager and the WH DataSet
manager
- ParticipantListTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class storage the XML ParticipantList Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ParticipantListTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantListTags
-
- ParticipantTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class storage the XML Participant Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ParticipantTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- Particle - Class in org.jbiowh.core.utility.fileformats.bioml.xml
-
- Particle() - Constructor for class org.jbiowh.core.utility.fileformats.bioml.xml.Particle
-
- Partner - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml
-
This class is the Partner XML parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Partner() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Partner
-
This constructor initialize the WH file manager and the WH DataSet
manager
- PARTNER - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.BondTypeTags
-
- PARTNER - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PartnerTags
-
- PartnerTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the Partner XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- PartnerTags() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PartnerTags
-
- passwd - Variable in class org.jbiowh.tools.defaultTools.AbstractDefaultTool
-
- PATENT - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PatentsTags
-
- PATENTS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PatentsTags
-
- PatentsTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the Patents XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- pathToFile - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.SourceFileType
-
- Pathway - Class in org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml
-
This is the Pathway XML parser from JAXB for KGML file format
- Pathway() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
- PATHWAY - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- PathwayPrintOnTSVFile - Class in org.jbiowh.core.datasets.pathway.kegg.parser.kgml
-
This class is print on the TSV file forma to be inserted on the DBMS
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- PeakListBinaryType - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
Extension of binary data group for m/z and intensity values
- PeakListBinaryType() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.PeakListBinaryType
-
- PeakListBinaryType.Data - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
Java class for anonymous complex type.
- PeakListBinaryType.Data() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.PeakListBinaryType.Data
-
- Peptide - Class in org.jbiowh.core.utility.fileformats.bioml.xml
-
- Peptide() - Constructor for class org.jbiowh.core.utility.fileformats.bioml.xml.Peptide
-
- peptide - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Protein
-
- Peptide - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
The Peptide element (complex) holds details of each peptide that has been used to arrive
at the identification above.
- Peptide() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.Peptide
-
- peptideItem - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
- PersonType - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
Data type for operator identification information.
- PersonType() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.PersonType
-
- PFAM - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PFamsTags
-
- PFAMA_HAS_ONTOLOGY - Static variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFAMA_HAS_PFAMARCHITECTURE - Static variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFAMA_HAS_PFAMLITERATUREREFERENCES - Static variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFAMA_HAS_TAXONOMY - Static variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFAMA_NCBI - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFAMA_ORIG - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamAbioWH - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamAbioWH entity
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $ $LastChangedRevision: 377 $
- PfamAbioWH() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- PfamAbioWH(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- PfamAbioWH(Long, String, String, String, String, String, String, String, double, double, double, double, double, double, String, int, String, double, double, double, double, double, double, Date, long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- PFAMABIOWH - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamAbioWHJpaController - Class in org.jbiowh.core.datasets.domain.pfam.jpa.controller
-
This class is the PfamAbioWH Jpa Controller
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $ $LastChangedRevision: 396 $
- PfamAbioWHJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamAbioWHJpaController
-
- PfamADatabaseLinks - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamADatabaseLinks entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamADatabaseLinks() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- PfamADatabaseLinks(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- PfamADatabaseLinks(Long, long, String, String) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- PFAMADATABASELINKS - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamAhasPfamLiteratureReferences - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamA_has_PfamLiteratureReferences entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamAhasPfamLiteratureReferences() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- PfamAhasPfamLiteratureReferences(PfamAhasPfamLiteratureReferencesPK) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- PfamAhasPfamLiteratureReferences(long, long, short) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- pfamAhasPfamLiteratureReferencesPK - Variable in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- PfamAhasPfamLiteratureReferencesPK - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamAhasPfamLiteratureReferences PK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamAhasPfamLiteratureReferencesPK() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferencesPK
-
- PfamAhasPfamLiteratureReferencesPK(long, long, short) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferencesPK
-
- PFAMAINTERACTIONS - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamANCBIReg - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamANCBIReg entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamANCBIReg() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- PfamANCBIReg(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- PfamANCBIReg(Long, long, long, int, int, int, int, int, int, double, String, double, String, short) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- PFAMANCBIREG - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamAPDBReg - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamAPDBReg entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamAPDBReg() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- PfamAPDBReg(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- PfamAPDBReg(Long, long, int, int) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- PFAMAPDBREG - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamArchitecture - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamArchitecture entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamArchitecture() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- PfamArchitecture(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- PfamArchitecture(Long, int, int) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- PFAMARCHITECTURE - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamArchitectureJpaController - Class in org.jbiowh.core.datasets.domain.pfam.jpa.controller
-
This class is the PfamArchitecture Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PfamArchitectureJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamArchitectureJpaController
-
- PfamARegFullInsignificant - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamARegFullInsignificant entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamARegFullInsignificant() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- PfamARegFullInsignificant(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- PfamARegFullInsignificant(Long, long, long, long, int, int, int, int, double, String, double, String) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- PFAMAREGFULLINSIGNIFICANT - Static variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamARegFullInsignificantJpaController - Class in org.jbiowh.core.datasets.domain.pfam.jpa.controller
-
This class is the PfamARegFullInsignificant Jpa Controller
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $ $LastChangedRevision: 396 $
- PfamARegFullInsignificantJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamARegFullInsignificantJpaController
-
- PfamARegFullSignificant - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamARegFullSignificant entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamARegFullSignificant() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- PfamARegFullSignificant(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- PfamARegFullSignificant(Long, long, long, long, int, int, int, int, int, int, double, String, double, String, short) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- PFAMAREGFULLSIGNIFICANT - Static variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamARegFullSignificantJpaController - Class in org.jbiowh.core.datasets.domain.pfam.jpa.controller
-
This class is the PfamARegFullSignificant Jpa Controller
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $ $LastChangedRevision: 396 $
- PfamARegFullSignificantJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamARegFullSignificantJpaController
-
- PFAMAREGFULLSIGNIFICANTTEMP - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamARegSeed - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamARegSeed entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamARegSeed() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- PfamARegSeed(PfamARegSeedPK) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- PfamARegSeed(PfamARegSeedPK, int, int) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- PfamARegSeed(long, long, int) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- PFAMAREGSEED - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- pfamARegSeedPK - Variable in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- PfamARegSeedPK - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamARegSeed PK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamARegSeedPK() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeedPK
-
- PfamARegSeedPK(long, long, int) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeedPK
-
- PFamATransfer - Class in org.jbiowh.core.datasets.domain.pfam.jpa.transfer
-
This class handled the PFAM transfer process
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PFamATransfer(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.transfer.PFamATransfer
-
Create the PFamA transfer
- PFamATransfer(WHDBMSFactory) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.transfer.PFamATransfer
-
Create the PFamA transfer
- PfamBbioWH - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamBbioWH entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamBbioWH() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- PfamBbioWH(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- PFAMBBIOWH - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamBbioWHJpaController - Class in org.jbiowh.core.datasets.domain.pfam.jpa.controller
-
This Class is the PfamBbioWH Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PfamBbioWHJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamBbioWHJpaController
-
- PfamBReg - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamBReg entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamBReg() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- PfamBReg(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- PfamBReg(Long, long, long, int, int) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- PFAMBREG - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamClanDatabaseLinks - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamClanDatabaseLinks entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamClanDatabaseLinks() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- PfamClanDatabaseLinks(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- PfamClanDatabaseLinks(Long, long, String, String) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- PFAMCLANDATABASELINKS - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamClans - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is PfamClans entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamClans() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- PfamClans(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- PfamClans(Long, String, String, String, Date) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- PFAMCLANS - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFAMCLANS_HAS_PFAMA - Static variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFAMCLANS_HAS_PFAMARCHITECTURE - Static variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFAMCLANS_HAS_PFAMLITERATUREREFERENCES - Static variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamClanshasPfamLiteratureReferences - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamClans_has_PfamLiteratureReferences entity
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $ $LastChangedRevision: 344 $
- PfamClanshasPfamLiteratureReferences() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- PfamClanshasPfamLiteratureReferences(PfamClanshasPfamLiteratureReferencesPK) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- PfamClanshasPfamLiteratureReferences(long, long, short) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- pfamClanshasPfamLiteratureReferencesPK - Variable in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- PfamClanshasPfamLiteratureReferencesPK - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamClanshasPfamLiteratureReferences PK
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $ $LastChangedRevision: 344 $
- PfamClanshasPfamLiteratureReferencesPK() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferencesPK
-
- PfamClanshasPfamLiteratureReferencesPK(long, long, short) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferencesPK
-
- PfamClansJpaController - Class in org.jbiowh.core.datasets.domain.pfam.jpa.controller
-
This class is the PfamClans Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PfamClansJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamClansJpaController
-
- PfamCompleteProteomes - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamCompleteProteomes entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PfamCompleteProteomes() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- PfamCompleteProteomes(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- PfamCompleteProteomes(Long, int, int, int, int, int, int, long, long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- PFAMCOMPLETEPROTEOMES - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFAMCOMPLETEPROTEOMES_HAS_PFAMSEQ - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamCompleteProteomesJpaController - Class in org.jbiowh.core.datasets.domain.pfam.jpa.controller
-
This class is the PfamCompleteProteomes Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PfamCompleteProteomesJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamCompleteProteomesJpaController
-
- PfamContextRegions - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamContextRegions entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamContextRegions() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- PfamContextRegions(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- PfamContextRegions(Long, long, long, int, int, double) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- PFAMCONTEXTREGIONS - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFamDataSetView - Class in org.jbiowh.gui.datasets.domain.pfam
-
This class handled the PFam View
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-12-04 11:38:52 +0100
(Tue, 04 Dec 2012) $ $LastChangedRevision: 377 $
- PFamDataSetView(JComponent, Object) - Constructor for class org.jbiowh.gui.datasets.domain.pfam.PFamDataSetView
-
Creates new form AbstractDataSetView
- PfamInterpro - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamInterpro entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamInterpro() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamInterpro
-
- PfamInterpro(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamInterpro
-
- PfamInterpro(Long, String, String) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamInterpro
-
- PFAMINTERPRO - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFamLinks - Class in org.jbiowh.core.datasets.domain.pfam.parser.links
-
This Class is the PFAM external links
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $ $LastChangedRevision: 344 $
- PFamListView - Class in org.jbiowh.gui.datasets.domain.pfam
-
This class shows the Pfam List
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PFamListView(Collection<PfamAbioWH>, JComponent) - Constructor for class org.jbiowh.gui.datasets.domain.pfam.PFamListView
-
Create the Pfam List object
- PfamLiteratureReferences - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamLiteratureReferences entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamLiteratureReferences() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- PfamLiteratureReferences(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- PFAMLITERATUREREFERENCES - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamLiteratureReferencesJpaController - Class in org.jbiowh.core.datasets.domain.pfam.jpa.controller
-
This class is the PfamLiteratureReferences Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PfamLiteratureReferencesJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamLiteratureReferencesJpaController
-
- PFAMMARKUP_HAS_PROTEIN - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamMarkupKey - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamMarkupKey entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamMarkupKey() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamMarkupKey
-
- PfamMarkupKey(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamMarkupKey
-
- PFAMMARKUPKEY - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamNestedLocations - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamNestedLocations entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamNestedLocations() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- PfamNestedLocations(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- PfamNestedLocations(Long, long, long, long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- PFAMNESTEDLOCATIONS - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFamOntologyLink - Class in org.jbiowh.core.datasets.domain.pfam.parser.links
-
This Class is the PFAM-Ontology external links
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PfamOtherReg - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamOtherReg entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamOtherReg() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- PfamOtherReg(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- PfamOtherReg(Long, long, int, int, String, String) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- PFAMOTHERREG - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFamParser - Class in org.jbiowh.core.datasets.domain.pfam.parser
-
This class is the Pfam Parser
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $ $LastChangedRevision: 396 $
- PFamParser() - Constructor for class org.jbiowh.core.datasets.domain.pfam.parser.PFamParser
-
- PfamPDB - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamPDB entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamPDB() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- PfamPDB(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- PfamPDB(Long, String) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- PFAMPDB - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamPDBResidueData - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamPDBResidueData entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamPDBResidueData() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- PfamPDBResidueData(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- PfamPDBResidueData(Long, long, long, String, int) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- PFAMPDBRESIDUEDATA - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFamProteinLink - Class in org.jbiowh.core.datasets.domain.pfam.parser.links
-
This Class is the PFam-Protein external link
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PfamProteomeRegions - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamProteomeRegions entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamProteomeRegions() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- PfamProteomeRegions(PfamProteomeRegionsPK) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- PfamProteomeRegions(PfamProteomeRegionsPK, int) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- PfamProteomeRegions(long, long, long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- PFAMPROTEOMEREGIONS - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamProteomeRegionsJpaController - Class in org.jbiowh.core.datasets.domain.pfam.jpa.controller
-
This class is the PfamProteomeRegions Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PfamProteomeRegionsJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamProteomeRegionsJpaController
-
- pfamProteomeRegionsPK - Variable in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- PfamProteomeRegionsPK - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamProteomeRegions PK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamProteomeRegionsPK() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegionsPK
-
- PfamProteomeRegionsPK(long, long, long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegionsPK
-
- PFAMS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PFamsTags
-
- PFAMSEQ_HAS_PROTEIN - Static variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFAMSEQ_HAS_UNIPROTID - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamSeqDisulphide - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamSeqDisulphide entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamSeqDisulphide() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqDisulphide
-
- PfamSeqDisulphide(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqDisulphide
-
- PfamSeqDisulphide(Long, long, int) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqDisulphide
-
- PFAMSEQDISULPHIDE - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamSeqhasProtein - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamSeq_has_Protein entity
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $ $LastChangedRevision: 344 $
- PfamSeqhasProtein() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- PfamSeqhasProtein(PfamSeqhasProteinPK) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- PfamSeqhasProtein(long, long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- pfamSeqhasProteinPK - Variable in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- PfamSeqhasProteinPK - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamSeqhasProtein PK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamSeqhasProteinPK() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProteinPK
-
- PfamSeqhasProteinPK(long, long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProteinPK
-
- PfamSeqhasUniProtId - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamSeq_has_UniProtId entity
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $ $LastChangedRevision: 344 $
- PfamSeqhasUniProtId() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasUniProtId
-
- PfamSeqhasUniProtId(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasUniProtId
-
- PfamSeqhasUniProtId(Long, String) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasUniProtId
-
- PFamSQLfiles - Class in org.jbiowh.core.datasets.domain.pfam.parser.files
-
This class load the Pfam SQL database into the JBioWH relational schema
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-19 09:38:47 +0100
(Tue, 19 Mar 2013) $ $LastChangedRevision: 515 $
- PFamSQLfiles() - Constructor for class org.jbiowh.core.datasets.domain.pfam.parser.files.PFamSQLfiles
-
- PFamSQLReader - Class in org.jbiowh.core.datasets.domain.pfam.parser.files
-
This class read the Pfam SQL script and execute it
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PFamSQLReader() - Constructor for class org.jbiowh.core.datasets.domain.pfam.parser.files.PFamSQLReader
-
- PFamsTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the PFams XMl Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- PFamTables - Class in org.jbiowh.core.datasets.domain.pfam.parser
-
This Class is the Pfam Table list
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PFamTaxonomyLink - Class in org.jbiowh.core.datasets.domain.pfam.parser.links
-
This Class is the PFAM-Taxonomy external link
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $ $LastChangedRevision: 396 $
- PFROM - Variable in class org.jbiowh.core.datasets.gene.genome.search.SearchGenePTT
-
- PHARMACOLOGY - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugTags
-
- pi - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.TwoDimensionalIdentificationType
-
- Plasmid - Class in org.jbiowh.core.utility.fileformats.bioml.xml
-
- Plasmid() - Constructor for class org.jbiowh.core.utility.fileformats.bioml.xml.Plasmid
-
- PLENGTH - Variable in class org.jbiowh.core.datasets.gene.genome.search.SearchGenePTT
-
- Point - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
Defines a coordinate system for describing the position of a spot on a gel.
- Point() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.Point
-
- populate(DrugBank, int) - Method in class org.jbiowh.core.datasets.drug.drugbank.util.DrugPathwayGraph
-
The recursive function to populate the graph from DrugBank entity.
- populate(KEGGPathway, int) - Method in class org.jbiowh.core.datasets.drug.drugbank.util.DrugPathwayGraph
-
The recursive function to populate the graph from KEGGPathway entity.
- populate(Protein, int) - Method in class org.jbiowh.core.datasets.protein.utils.ProteinProteinGraph
-
The recursive function to populate the graph from Protein entity.
- populate(Object) - Method in class org.jbiowh.core.datasets.taxonomy.utils.TaxonomyGraph
-
Creates the Taxonomy graph from the parent Tax Id
- populate(Object, int) - Method in class org.jbiowh.core.datasets.taxonomy.utils.TaxonomyGraph
-
Creates the Taxonomy graph from the parent Tax Id with a depth limit If
depth is equal to -1 there is not limit
- populate(Object) - Method in class org.jbiowh.core.datasets.taxonomy.utils.TaxonomyTaxIdGraph
-
Creates the Taxonomy graph from the parent Tax Id
- populate(Object, int) - Method in class org.jbiowh.core.datasets.taxonomy.utils.TaxonomyTaxIdGraph
-
Creates the Taxonomy graph from the parent Tax Id with a depth limit If
depth is equal to -1 there is not limit
- populate(Object) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
Populates the graph from the JBioWH main entity in the object o
- populate(Object, int) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
The recursive function to populate the graph from the JBioWH main entity
in the object o
- populate(PfamAbioWH, int) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
The recursive function to populate the graph from PfamAbioWH entity
- populate(OMIM, int) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
The recursive function to populate the graph from OMIM entity
- populate(UniRefMember, int) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
The recursive function to populate the graph from UniRefMember entity
- populate(UniRefEntry, int) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
The recursive function to populate the graph from UniRefEntry entity
- populate(KEGGReaction, int) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
The recursive function to populate the graph from KEGGReaction entity
- populate(KEGGGlycan, int) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
The recursive function to populate the graph from KEGGGlycan entity
- populate(KEGGGene, int) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
The recursive function to populate the graph from KEGGGene entity
- populate(KEGGEnzyme, int) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
The recursive function to populate the graph from KEGGEnzyme entity
- populate(KEGGCompound, int) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
The recursive function to populate the graph from KEGGCompound entity
- populate(MIFEntryInteraction, int) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
The recursive function to populate the graph from MIFEntryInteraction
entity
- populate(MIFEntrySetEntry, int) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
The recursive function to populate the graph from MIFEntrySetEntry entity
- populate(MIFEntrySet, int) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
The recursive function to populate the graph from MIFEntrySet entity
- populate(GenePTT, int) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
The recursive function to populate the graph from GenePTT entity
- populate(GeneInfo, int) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
The recursive function to populate the graph from GeneInfo entity
- populate(GeneBank, int) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
The recursive function to populate the graph from GeneBank entity
- populate(GeneBankCDS, int) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
The recursive function to populate the graph from GeneBankCDS entity
- populate(Protein, int) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
The recursive function to populate the graph from Protein entity
- populate(DrugBank, int) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
The recursive function to populate the graph from DrugBank entity
- populate(KEGGPathway, int) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
The recursive function to populate the graph from KEGGPathway entity
- populateCollection(Collection, Object, int) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
Add each element of the collection as a new vertex connected to the
object o
- populateCollection(Collection, Object, int, Object) - Method in class org.jbiowh.core.utility.graph.JBioWHGraph
-
Add each element of the collection as a new vertex connected to the
object o in a weighted graph
- PopupConstrainPanel - Class in org.jbiowh.gui.component.popup
-
This Class is the Constrains Panel Popup Menu
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PopupConstrainPanel(JComponent) - Constructor for class org.jbiowh.gui.component.popup.PopupConstrainPanel
-
- PopupCreateTable - Class in org.jbiowh.gui.component.popup
-
This Class is the Create table dialog popup
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- PopupCreateTable(JComponent, JTable) - Constructor for class org.jbiowh.gui.component.popup.PopupCreateTable
-
Create the popup on the CreateTable Dialog
- PopupListView - Class in org.jbiowh.gui.component.popup
-
This Class is the List View's Popup Menu
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PopupListView(JComponent) - Constructor for class org.jbiowh.gui.component.popup.PopupListView
-
Create the PopupListView object
- PopupResultTab - Class in org.jbiowh.gui.component.popup
-
This Class is the ResultTab panel popup
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- PopupResultTab(JComponent) - Constructor for class org.jbiowh.gui.component.popup.PopupResultTab
-
Create the PopupListView object
- PopupSearchConstrain - Class in org.jbiowh.gui.component.popup
-
This Class is the Constrains Table Popup Menu on SearchPanel
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- PopupSearchConstrain(JComponent) - Constructor for class org.jbiowh.gui.component.popup.PopupSearchConstrain
-
- PopupSQLEditor - Class in org.jbiowh.gui.component.popup
-
This Class is the SQL Editor popup
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- PopupSQLEditor(JComponent) - Constructor for class org.jbiowh.gui.component.popup.PopupSQLEditor
-
- PopupSQLEditorTables - Class in org.jbiowh.gui.component.popup
-
This Class is
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- PopupSQLEditorTables(JComponent, Set<String>) - Constructor for class org.jbiowh.gui.component.popup.PopupSQLEditorTables
-
- PopupSQLSchema - Class in org.jbiowh.gui.component.popup
-
This Class is the SQLTablesTab panel popup
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- PopupSQLSchema(JComponent) - Constructor for class org.jbiowh.gui.component.popup.PopupSQLSchema
-
Creates the SQLTables popup
- POSITION - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.BondTypeTags
-
- POSITION - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- POSITION1 - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- POSITION2 - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- post - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- PPIGraph - Class in org.jbiowh.tools.examples
-
This class create a Protein-Protein graph
$Author$ $LastChangedDate$ $LastChangedRevision$
- PPIGraph() - Constructor for class org.jbiowh.tools.examples.PPIGraph
-
- pre - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- precision - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.PeakListBinaryType.Data
-
- precursor - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumDescType.PrecursorList
-
- precursorList - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumDescType
-
- PrecursorType - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
The method of precursor ion selection and activation
- PrecursorType() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.PrecursorType
-
- PreexistingEntityException - Exception in org.jbiowh.core.utility.controller.exceptions
-
- PreexistingEntityException(String, Throwable) - Constructor for exception org.jbiowh.core.utility.controller.exceptions.PreexistingEntityException
-
- PreexistingEntityException(String) - Constructor for exception org.jbiowh.core.utility.controller.exceptions.PreexistingEntityException
-
- PRICE - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PricesTags
-
- PRICES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PricesTags
-
- PricesTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the Prices XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- PrideXMLParser - Class in org.jbiowh.tools.fileformats
-
This class is the PrideXMl parser
$Author$ $LastChangedDate$ $LastChangedRevision$
- PrideXMLParser() - Constructor for class org.jbiowh.tools.fileformats.PrideXMLParser
-
- print(String) - Method in class org.jbiowh.tools.defaultTools.AbstractDefaultTool
-
This method print in both file, the result and the System.out and does
not includes the end of line
- printDefaultHelp() - Method in class org.jbiowh.tools.defaultTools.AbstractDefaultTool
-
Method to print the help
- printHelp() - Method in class org.jbiowh.core.datasets.mainloader.DataSetLoader
-
- printHelp() - Method in class org.jbiowh.tools.dataset.DataSetReport
-
- printHelp() - Method in class org.jbiowh.tools.defaultTools.AbstractDefaultTool
-
Method to print the help
- printHelp() - Method in class org.jbiowh.tools.examples.AntibioticGeneNeighbors
-
Method to print the help
- printHelp() - Method in class org.jbiowh.tools.examples.AntibioticGeneNeighborTax
-
Method to print the help
- printHelp() - Method in class org.jbiowh.tools.examples.DrugNeighbors
-
- printHelp() - Method in class org.jbiowh.tools.examples.DrugProteinPathwayGraph
-
- printHelp() - Method in class org.jbiowh.tools.examples.FindALLHumProt
-
- printHelp() - Method in class org.jbiowh.tools.examples.FindALLHumProtinGO
-
- printHelp() - Method in class org.jbiowh.tools.examples.FindALLHumProtinGOwithConst
-
- printHelp() - Method in class org.jbiowh.tools.examples.FindGenefromDrug
-
- printHelp() - Method in class org.jbiowh.tools.examples.FrecPathGeneNeighbors
-
Method to print the help
- printHelp() - Method in class org.jbiowh.tools.examples.PPIGraph
-
- printHelp() - Method in class org.jbiowh.tools.fileformats.BiomlParser
-
- printHelp() - Method in class org.jbiowh.tools.fileformats.ExtractGiFromFasta
-
- printHelp() - Method in class org.jbiowh.tools.fileformats.PrideXMLParser
-
- printHelp() - Method in class org.jbiowh.tools.fileformats.ReformatFasta
-
- printHelp() - Method in class org.jbiowh.tools.gene.FindGenefromProteinGi
-
- printHelp() - Method in class org.jbiowh.tools.gene.GenesDrugsFromTaxonomyFamily
-
- printHelp() - Method in class org.jbiowh.tools.gene.GenomeDataFromTaxGraph
-
- printHelp() - Method in class org.jbiowh.tools.genebank.FindGeneBankFlat
-
- printHelp() - Method in class org.jbiowh.tools.genebank.FindGeneBankTax
-
- printHelp() - Method in class org.jbiowh.tools.genebank.FindGeneFromGeneBankPos
-
- printHelp() - Method in class org.jbiowh.tools.genebank.FindonGeneBankperTaxFamily
-
- printHelp() - Method in class org.jbiowh.tools.genebank.FindOnRefSeqFlat
-
- printHelp() - Method in class org.jbiowh.tools.msms.MSParserTool
-
- printHelp() - Method in class org.jbiowh.tools.protein.FindProtein
-
- printHelp() - Method in class org.jbiowh.tools.protein.FindProteinFromTaxonomy
-
- printHelp() - Method in class org.jbiowh.tools.prototypes.insert.InsertDBToDB
-
- printHelp() - Method in class org.jbiowh.tools.prototypes.temp.Test
-
- printHelp() - Method in class org.jbiowh.tools.taxonomy.CreateTaxonomyTree
-
- printHelp() - Method in class org.jbiowh.tools.taxonomy.FindTaxonomyGraph
-
- printIds() - Method in class org.jbiowh.core.utility.fileformats.fasta.FastaEntry
-
Print the ids list
- println(String) - Method in class org.jbiowh.tools.defaultTools.AbstractDefaultTool
-
This method print in both file, the result and the System.out and
includes the end of line
- printObjectReference(Object) - Method in class org.jbiowh.core.logger.VerbLogger
-
Print the object reference
- printOnTSVFile() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.gene.KEGGGene
-
- printOnTSVFile() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.ligand.KEGGCompound
-
Print the Compound entry on the TSV file set
- printOnTSVFile() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.ligand.KEGGEnzyme
-
Print the Enzyme entry on the TSV file set
- printOnTSVFile() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.ligand.KEGGGlycan
-
- printOnTSVFile() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.ligand.KEGGReaction
-
Print the Reaction entry on the TSV file set
- printOnTSVFile() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.ligand.KEGGRPair
-
Print the Rpair entry on the TSV file set
- printOnTSVFile() - Method in interface org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFactory
-
- printOnTSVFile(String, String, String) - Method in class org.jbiowh.core.utility.utils.ParseFiles
-
Print on TSV file
- printOnTSVFile(String, Integer, String) - Method in class org.jbiowh.core.utility.utils.ParseFiles
-
Print on TSV file
- printOnTSVFile(String, boolean, String) - Method in class org.jbiowh.core.utility.utils.ParseFiles
-
Print on TSV file
- printOnTSVFile(String, Long, String) - Method in class org.jbiowh.core.utility.utils.ParseFiles
-
Print on TSV file
- printOnTSVFileArrayListValue(boolean, long, String, String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserEntry
-
Print into the fileName TSV file the KEGG's field data
- printPathwayOnTSVFile(Pathway) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.PathwayPrintOnTSVFile
-
Print on TSV file the Pathway object loaded from a KGML file
- printProteinName(PrintWriter, List<Protein>) - Method in class org.jbiowh.core.datasets.protein.utils.ProteinUtils
-
Print the protein ID (name) on the write file
- printProteinName(PrintStream, List<Protein>) - Method in class org.jbiowh.core.datasets.protein.utils.ProteinUtils
-
Print the protein ID (name) on the PrintStream file
- processingMethod - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.DataProcessingType
-
- PRODUCT - Variable in class org.jbiowh.core.datasets.gene.genome.search.SearchGenePTT
-
- Product - Class in org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml
-
This is the Product XML parser from JAXB for KGML file format
- Product() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Product
-
- product - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Reaction
-
- PRODUCT - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- ProgressDialog - Class in org.jbiowh.gui.component.dialog.progress
-
- ProgressDialog(Frame, boolean) - Constructor for class org.jbiowh.gui.component.dialog.progress.ProgressDialog
-
Creates new form ProgressDialog
- ProjectList - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
Java class for ProjectList complex type.
- ProjectList() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.ProjectList
-
- Promotor - Class in org.jbiowh.core.utility.fileformats.bioml.xml
-
- Promotor() - Constructor for class org.jbiowh.core.utility.fileformats.bioml.xml.Promotor
-
- PROPERTY - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PropertyTypeTags
-
- Property - Class in org.jbiowh.core.datasets.protclust.parser.xml
-
This Class is the Property XMl parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Property(String, String) - Constructor for class org.jbiowh.core.datasets.protclust.parser.xml.Property
-
- PROPERTY - Variable in class org.jbiowh.core.datasets.protclust.parser.xml.tags.PropertyTags
-
- PropertyTags - Class in org.jbiowh.core.datasets.protclust.parser.xml.tags
-
This Class is the Property XML tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- PropertyTags() - Constructor for class org.jbiowh.core.datasets.protclust.parser.xml.tags.PropertyTags
-
- PropertyTypeTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the PropertyType XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- Protein - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- Protein() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- Protein(Long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- Protein(Long, String, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- PROTEIN - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- protein - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- Protein - Class in org.jbiowh.core.utility.fileformats.bioml.xml
-
This is the Protein XML parser class
- Protein() - Constructor for class org.jbiowh.core.utility.fileformats.bioml.xml.Protein
-
- PROTEIN_HAS_DRUGBANK - Static variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEIN_HAS_DRUGBANKASCARRIERS - Static variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEIN_HAS_DRUGBANKASENZYME - Static variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEIN_HAS_DRUGBANKASTRANSPORTERS - Static variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEIN_HAS_GENEINFO - Static variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEIN_HAS_GENEPTT - Static variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEIN_HAS_KEGGENZYME - Static variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEIN_HAS_ONTOLOGY - Static variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEIN_HAS_PROTEINKEYWORD - Static variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEIN_HAS_TAXONOMY - Static variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEIN_HAS_TAXONOMYHOST - Static variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinAccessionNumber - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Accession NUmber entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinAccessionNumber() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumber
-
- ProteinAccessionNumber(ProteinAccessionNumberPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumber
-
- ProteinAccessionNumber(ProteinAccessionNumberPK, int) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumber
-
- ProteinAccessionNumber(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumber
-
- PROTEINACCESSIONNUMBER - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinAccessionNumberPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumber
-
- ProteinAccessionNumberPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinAccessionNumberPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinAccessionNumberPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumberPK
-
- ProteinAccessionNumberPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumberPK
-
- PROTEINBINDING - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugTags
-
- ProteinBioCyc - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein BioCyc entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinBioCyc() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCyc
-
- ProteinBioCyc(ProteinBioCycPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCyc
-
- ProteinBioCyc(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCyc
-
- PROTEINBIOCYC - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinBioCycPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCyc
-
- ProteinBioCycPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinBioCycPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinBioCycPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCycPK
-
- ProteinBioCycPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCycPK
-
- PROTEINBIOCYCTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinComment - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Comment entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinComment() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- ProteinComment(Long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- ProteinComment(Long, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- PROTEINCOMMENT - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinCommentConflict - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinCommentConflict entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinCommentConflict() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- ProteinCommentConflict(ProteinCommentConflictPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- ProteinCommentConflict(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- PROTEINCOMMENTCONFLICT - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinCommentConflictPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- ProteinCommentConflictPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinCommentConflictPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinCommentConflictPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflictPK
-
- ProteinCommentConflictPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflictPK
-
- ProteinCommentEvent - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Comment Event entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinCommentEvent() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEvent
-
- ProteinCommentEvent(ProteinCommentEventPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEvent
-
- ProteinCommentEvent(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEvent
-
- PROTEINCOMMENTEVENT - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinCommentEventPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEvent
-
- ProteinCommentEventPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinCommentEventPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinCommentEventPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEventPK
-
- ProteinCommentEventPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEventPK
-
- ProteinCommentInteract - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Comment Interact entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinCommentInteract() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- ProteinCommentInteract(ProteinCommentInteractPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- ProteinCommentInteract(ProteinCommentInteractPK, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- ProteinCommentInteract(long, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- PROTEINCOMMENTINTERACT - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinCommentInteractPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- ProteinCommentInteractPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinCommentInteractPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinCommentInteractPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteractPK
-
- ProteinCommentInteractPK(long, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteractPK
-
- ProteinCommentIsoform - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Comment Isoform entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinCommentIsoform() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- ProteinCommentIsoform(Long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- ProteinCommentIsoform(Long, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- PROTEINCOMMENTISOFORM - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinCommentLink - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Comment Link entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinCommentLink() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLink
-
- ProteinCommentLink(ProteinCommentLinkPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLink
-
- ProteinCommentLink(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLink
-
- PROTEINCOMMENTLINK - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinCommentLinkPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLink
-
- ProteinCommentLinkPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinCommentLinkPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinCommentLinkPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLinkPK
-
- ProteinCommentLinkPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLinkPK
-
- ProteinCommentSubCellularLocation - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinCommentSubCellularLocation() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- ProteinCommentSubCellularLocation(Long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- ProteinCommentSubCellularLocation(Long, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- PROTEINCOMMENTSUBCELLULARLOCATION - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinDataSetView - Class in org.jbiowh.gui.datasets.protein
-
This Class handled the Protein View
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-12-04 11:38:29 +0100
(Tue, 04 Dec 2012) $ $LastChangedRevision: 591 $
- ProteinDataSetView(JComponent, Object) - Constructor for class org.jbiowh.gui.datasets.protein.ProteinDataSetView
-
Creates new form AbstractDataSetView
- ProteinDBReference - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein DB reference entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinDBReference() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- ProteinDBReference(Long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- ProteinDBReference(Long, long, String, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- PROTEINDBREFERENCE - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinDBReferenceProperty - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is Protein DB Reference Property entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinDBReferenceProperty() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferenceProperty
-
- ProteinDBReferenceProperty(ProteinDBReferencePropertyPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferenceProperty
-
- ProteinDBReferenceProperty(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferenceProperty
-
- PROTEINDBREFERENCEPROPERTY - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinDBReferencePropertyPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferenceProperty
-
- ProteinDBReferencePropertyPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinDBReferencePropertyPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinDBReferencePropertyPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferencePropertyPK
-
- ProteinDBReferencePropertyPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferencePropertyPK
-
- ProteinDIP - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein DIP entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinDIP() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIP
-
- ProteinDIP(ProteinDIPPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIP
-
- ProteinDIP(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIP
-
- PROTEINDIP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinDIPPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIP
-
- ProteinDIPPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinDIPPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinDIPPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIPPK
-
- ProteinDIPPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIPPK
-
- PROTEINDIPTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinDrugBank - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein DrugBank entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinDrugBank() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBank
-
- ProteinDrugBank(ProteinDrugBankPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBank
-
- ProteinDrugBank(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBank
-
- PROTEINDRUGBANK - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinDrugBankPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBank
-
- ProteinDrugBankPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinDrugBankPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinDrugBankPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBankPK
-
- ProteinDrugBankPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBankPK
-
- PROTEINDRUGBANKTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinEC - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein EC entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinEC() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinEC
-
- ProteinEC(ProteinECPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinEC
-
- ProteinEC(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinEC
-
- PROTEINEC - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinECPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinEC
-
- ProteinECPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinECPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinECPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinECPK
-
- ProteinECPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinECPK
-
- PROTEINECTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinFastatoFile(String) - Method in class org.jbiowh.core.datasets.protein.utils.ProteinToFasta
-
Read the Uniprot Id from the file name and print the fasta format in the
PrintWriter passed to the constructor
- proteinFastatoFile(Collection) - Method in class org.jbiowh.core.datasets.protein.utils.ProteinToFasta
-
The method receives a collection and print the proteins in the file
passed to the constructor
If the objects collection is a collection
of string with the UniProt Id or Accession Code the method search the
protein and print the fasta format.
If the objects collection is a
collection of Proteins the method print the fasta format.
- ProteinFeature - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Feature entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinFeature() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- ProteinFeature(Long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- ProteinFeature(Long, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- PROTEINFEATURE - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinFeatureVariation - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Feature Variation entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinFeatureVariation() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeatureVariation
-
- ProteinFeatureVariation(Long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeatureVariation
-
- ProteinFeatureVariation(Long, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeatureVariation
-
- PROTEINFEATUREVARIATION - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinFromOther - Class in org.jbiowh.core.datasets.protein.utils
-
This class is used to retrieve proteins from other JBioWH biological objects
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $ $LastChangedRevision: 396 $
- ProteinFromOther() - Constructor for class org.jbiowh.core.datasets.protein.utils.ProteinFromOther
-
Create a ProteinFromOther object to retrieve proteins
- PROTEINGENE - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinGeneLink - Class in org.jbiowh.core.datasets.protein.parser.links
-
This Class create the Protein_has_Gene relationship table
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- ProteinGeneLocation - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinGeneLocation entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinGeneLocation() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- ProteinGeneLocation(Long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- ProteinGeneLocation(Long, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- PROTEINGENELOCATION - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEINGENENAME - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinGenePTTLink - Class in org.jbiowh.core.datasets.protein.parser.links
-
This Class populates the Protein_has_GenePTT relationship table
$Author$
$LastChangedDate$
$LastChangedRevision$
- PROTEINGENETEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEINGI - Variable in class org.jbiowh.core.datasets.gene.gene.search.SearchGeneInfo
-
- PROTEINGI - Variable in class org.jbiowh.core.datasets.gene.genebank.search.SearchGeneBank
-
- PROTEINGI - Variable in class org.jbiowh.core.datasets.gene.genome.search.SearchGenePTT
-
- PROTEINGO - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEINGOTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinhasProteinKeyword - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This class is the Protein_has_ProteinKeyword entity
- ProteinhasProteinKeyword() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- ProteinhasProteinKeyword(ProteinhasProteinKeywordPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- ProteinhasProteinKeyword(long, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- proteinhasProteinKeywordPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- ProteinhasProteinKeywordPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This class is the ProteinhasProteinKeyword PK
- ProteinhasProteinKeywordPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeywordPK
-
- ProteinhasProteinKeywordPK(long, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeywordPK
-
- ProteinIntAct - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Intact entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinIntAct() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntAct
-
- ProteinIntAct(ProteinIntActPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntAct
-
- ProteinIntAct(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntAct
-
- PROTEININTACT - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinIntActPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntAct
-
- ProteinIntActPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinIntActPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinIntActPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntActPK
-
- ProteinIntActPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntActPK
-
- PROTEININTACTTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinIsoformId - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Isoform Id entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinIsoformId() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformId
-
- ProteinIsoformId(ProteinIsoformIdPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformId
-
- ProteinIsoformId(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformId
-
- PROTEINISOFORMID - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinIsoformIdPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformId
-
- ProteinIsoformIdPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinIsoformIdPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinIsoformIdPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformIdPK
-
- ProteinIsoformIdPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformIdPK
-
- ProteinIsoformName - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Isoform Name entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinIsoformName() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformName
-
- ProteinIsoformName(ProteinIsoformNamePK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformName
-
- ProteinIsoformName(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformName
-
- PROTEINISOFORMNAME - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinIsoformNamePK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformName
-
- ProteinIsoformNamePK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinIsoformNamePK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinIsoformNamePK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformNamePK
-
- ProteinIsoformNamePK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformNamePK
-
- ProteinJpaController - Class in org.jbiowh.core.datasets.protein.jpa.controller
-
This class is the Protein Jpa Controller
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $ $LastChangedRevision: 591 $
- ProteinJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.protein.jpa.controller.ProteinJpaController
-
- ProteinKEGG - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein KEGG entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinKEGG() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGG
-
- ProteinKEGG(ProteinKEGGPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGG
-
- ProteinKEGG(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGG
-
- PROTEINKEGG - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinKEGGEnzymeLink - Class in org.jbiowh.core.datasets.protein.parser.links
-
This Class create the Protein_has_KEGGEnzyme relationship table
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- proteinKEGGPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGG
-
- ProteinKEGGPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinKEGGPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinKEGGPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGGPK
-
- ProteinKEGGPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGGPK
-
- PROTEINKEGGTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinKeyword - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Keyword entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinKeyword() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKeyword
-
- ProteinKeyword(Long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKeyword
-
- PROTEINKEYWORD - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinKeywordJpaController - Class in org.jbiowh.core.datasets.protein.jpa.controller
-
This class is the ProteinKeyword Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- ProteinKeywordJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.protein.jpa.controller.ProteinKeywordJpaController
-
- ProteinLinks - Class in org.jbiowh.core.datasets.protein.parser.links
-
This Class create all Protein external relationship tables
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- ProteinLinks() - Constructor for class org.jbiowh.core.datasets.protein.parser.links.ProteinLinks
-
- ProteinListView - Class in org.jbiowh.gui.datasets.protein
-
This Class shows the Protein List
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinListView(Collection<Protein>, JComponent) - Constructor for class org.jbiowh.gui.datasets.protein.ProteinListView
-
Create the Protein List object
- ProteinLongName - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Long Name
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinLongName() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- ProteinLongName(Long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- ProteinLongName(Long, long, String, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- PROTEINLONGNAME - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinMINT - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein MINT entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinMINT() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINT
-
- ProteinMINT(ProteinMINTPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINT
-
- ProteinMINT(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINT
-
- PROTEINMINT - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinMINTPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINT
-
- ProteinMINTPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinMINTPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinMINTPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINTPK
-
- ProteinMINTPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINTPK
-
- PROTEINMINTTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinName - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Name entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinName() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinName
-
- ProteinName(ProteinNamePK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinName
-
- ProteinName(ProteinNamePK, int) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinName
-
- ProteinName(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinName
-
- PROTEINNAME - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinNamePK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinName
-
- ProteinNamePK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinNamePK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinNamePK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinNamePK
-
- ProteinNamePK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinNamePK
-
- ProteinOntologyLink - Class in org.jbiowh.core.datasets.protein.parser.links
-
This Class create the Protein_has_Ontology relationship table
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- ProteinOtherLocation - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Other Location entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinOtherLocation() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- ProteinOtherLocation(Long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- ProteinOtherLocation(Long, long, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- PROTEINOTHERLOCATION - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinParser - Class in org.jbiowh.core.datasets.protein.parser
-
This Class is the Protein Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- ProteinParser() - Constructor for class org.jbiowh.core.datasets.protein.parser.ProteinParser
-
- ProteinPDB - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is Protein PDB entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinPDB() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDB
-
- ProteinPDB(ProteinPDBPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDB
-
- ProteinPDB(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDB
-
- PROTEINPDB - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinPDBPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDB
-
- ProteinPDBPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinPDBPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinPDBPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDBPK
-
- ProteinPDBPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDBPK
-
- PROTEINPDBTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinPFAM - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein PFAM entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinPFAM() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAM
-
- ProteinPFAM(ProteinPFAMPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAM
-
- ProteinPFAM(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAM
-
- PROTEINPFAM - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinPFAMPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAM
-
- ProteinPFAMPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinPFAMPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinPFAMPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAMPK
-
- ProteinPFAMPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAMPK
-
- PROTEINPFAMTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinPMID - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein PMID entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinPMID() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMID
-
- ProteinPMID(ProteinPMIDPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMID
-
- ProteinPMID(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMID
-
- PROTEINPMID - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinPMIDPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMID
-
- ProteinPMIDPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinPMIDPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinPMIDPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMIDPK
-
- ProteinPMIDPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMIDPK
-
- PROTEINPMIDTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinProteinGraph - Class in org.jbiowh.core.datasets.protein.utils
-
This class is creates a Protein-protein interaction graph
$Author$ $LastChangedDate$ $LastChangedRevision$
- ProteinProteinGraph(int) - Constructor for class org.jbiowh.core.datasets.protein.utils.ProteinProteinGraph
-
Creates a ProteinProteinGraph object where the graph object is a weighted
graph.
- ProteinProteinGraphFrame - Class in org.jbiowh.tools.examples
-
This frames create a graph of Protein-Protein interaction $Author$
$LastChangedDate$ $LastChangedRevision$
- ProteinProteinGraphFrame() - Constructor for class org.jbiowh.tools.examples.ProteinProteinGraphFrame
-
Creates new form ProteinProteinGraphFrame
- ProteinRefSeq - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinRefSeq entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinRefSeq() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeq
-
- ProteinRefSeq(ProteinRefSeqPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeq
-
- ProteinRefSeq(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeq
-
- PROTEINREFSEQ - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinRefSeqPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeq
-
- ProteinRefSeqPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinRefSeqPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinRefSeqPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeqPK
-
- ProteinRefSeqPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeqPK
-
- PROTEINREFSEQTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEINSEQUENCE - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ProteinSequencesTags
-
- PROTEINSEQUENCES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ProteinSequencesTags
-
- ProteinSequencesTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the ProteinSequences XMl Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinTables - Class in org.jbiowh.core.datasets.protein.parser
-
This Class is the Protein tables
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PROTEINTAXID - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinTaxonomyLink - Class in org.jbiowh.core.datasets.protein.parser.links
-
This Class create the Protein_has_Taxonomy relationship table
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- ProteinToFasta - Class in org.jbiowh.core.datasets.protein.utils
-
This class is used to print Proteins sequences in fasta format
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $ $LastChangedRevision: 396 $
- ProteinToFasta(PrintWriter) - Constructor for class org.jbiowh.core.datasets.protein.utils.ProteinToFasta
-
Create a ProteinToFasta object
- ProteinTransfer - Class in org.jbiowh.core.datasets.protein.jpa.transfer
-
This class handled the Protein transfer process
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- ProteinTransfer(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.protein.jpa.transfer.ProteinTransfer
-
Create the Protein transfer
- ProteinTransfer(WHDBMSFactory) - Constructor for class org.jbiowh.core.datasets.protein.jpa.transfer.ProteinTransfer
-
Create the Protein transfer
- ProteinType - Class in org.jbiowh.core.datasets.protein.parser.xml
-
This Class handled the ProteinType on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ProteinType() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.ProteinType
-
This constructor initialize the WH file manager and the WH DataSet
manager
- ProteinTypeTags - Class in org.jbiowh.core.datasets.protein.parser.xml.tags
-
This Class storage the XML Tags for ProteinType
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinTypeTags() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- ProteinUtils - Class in org.jbiowh.core.datasets.protein.utils
-
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-10-15 09:23:43 +0200 (Mon, 15 Oct 2012) $ $LastChangedRevision: 285 $
- PROTEINWIDKEYWORDTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProtFamDataSetView - Class in org.jbiowh.gui.datasets.protfam
-
This Class handled the ProtFam View
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ProtFamDataSetView(JComponent, Object) - Constructor for class org.jbiowh.gui.datasets.protfam.ProtFamDataSetView
-
Creates new form AbstractDataSetView
- protocol - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType
-
- protocolName - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.Protocol
-
- protocolSteps - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.Protocol
-
- PTO - Variable in class org.jbiowh.core.datasets.gene.genome.search.SearchGenePTT
-
- PTTData - Class in org.jbiowh.tools.gene
-
This class is
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $ $LastChangedRevision: 591 $
- PTTData(Long, Long, Long, String, String, String, BigInteger) - Constructor for class org.jbiowh.tools.gene.PTTData
-
- PTTData(Long, Long, Long, String, String, String, Long) - Constructor for class org.jbiowh.tools.gene.PTTData
-
- PTTData(Long, Long, Long, String, String, BigInteger) - Constructor for class org.jbiowh.tools.gene.PTTData
-
- PTTData(Long, Long, Long, String, String, Long) - Constructor for class org.jbiowh.tools.gene.PTTData
-
- PTTFILE - Variable in class org.jbiowh.core.datasets.gene.genome.search.SearchGenePTT
-
- put(String, SQLTableColumn) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumns
-
Maps the specified key to the specified SQLTableColumn column in this
table.
- put(String, SQLTableIndexColumn) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Maps the specified key to the specified SQLTableIndexColumn index in this
table.
- put(String, SQLTableIndex) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexes
-
Maps the specified key to the specified SQLTableIndex column in this
table.
- SA - Variable in class org.jbiowh.core.datasets.disease.omim.parser.files.tags.OMIMTabs
-
- sampleDescription - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.AdminType
-
- sampleName - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.AdminType
-
- save() - Method in class org.jbiowh.gui.save.SaveToFile
-
- SaveActionListener - Class in org.jbiowh.gui.actions.jbiowh
-
This class launch the save action on the main window
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- SaveActionListener(JBioWH) - Constructor for class org.jbiowh.gui.actions.jbiowh.SaveActionListener
-
Launch the save action on the main window
- SavedResults - Class in org.jbiowh.core.utility.utils
-
This Class is storage the previously saved results
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- SaveToFile - Class in org.jbiowh.gui.save
-
This Class is save a result to a file
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- SaveToFile(Component) - Constructor for class org.jbiowh.gui.save.SaveToFile
-
Creates a SaveToFile object to save the objects inside the component
- SaveToFile(Component, Object) - Constructor for class org.jbiowh.gui.save.SaveToFile
-
Creates a SaveToFile object to save the objects inside the component
- score - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.disease.omim.search.SearchOMIM
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.domain.pfam.search.SearchPFam
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.drug.drugbank.search.SearchDrugBank
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.gene.gene.search.SearchGeneInfo
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.gene.genebank.search.SearchGeneBank
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.gene.genome.search.SearchGenePTT
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.ontology.search.SearchOntology
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGCompound
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGlycan
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGPathway
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGReaction
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.protclust.search.SearchUniRef
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.protein.search.SearchProtein
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.taxonomy.search.SearchTaxonomy
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Perform the search
- search(List, JPLConstrains) - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Perform the search
- searchByWID(long, Class) - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Search Entity by WID
- searchByWID(List, Class) - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Search Entity from a WID list
- SearchDrugBank - Class in org.jbiowh.core.datasets.drug.drugbank.search
-
This class perform the search over the DrugBank module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 14:55:04 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 345 $
- SearchDrugBank() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.search.SearchDrugBank
-
Creates the DrugBank search object
- searchEngine - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
- SearchFactory - Class in org.jbiowh.core.utility.utils
-
This Class is the abstract search factory
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- SearchFactory() - Constructor for class org.jbiowh.core.utility.utils.SearchFactory
-
- SearchGeneBank - Class in org.jbiowh.core.datasets.gene.genebank.search
-
This class perform the search over the GeneBank module
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $ $LastChangedRevision: 591 $
- SearchGeneBank() - Constructor for class org.jbiowh.core.datasets.gene.genebank.search.SearchGeneBank
-
- SearchGeneInfo - Class in org.jbiowh.core.datasets.gene.gene.search
-
This Class perform the search over the Gene module
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-09-25 00:06:19 +0200
(Tue, 25 Sep 2012) $ $LastChangedRevision: 591 $
- SearchGeneInfo() - Constructor for class org.jbiowh.core.datasets.gene.gene.search.SearchGeneInfo
-
Create the Gene search object
- SearchGenePTT - Class in org.jbiowh.core.datasets.gene.genome.search
-
This Class perform the search over the GenePTT module
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-11-08 14:37:19 +0100
(Thu, 08 Nov 2012) $ $LastChangedRevision: 591 $
- SearchGenePTT() - Constructor for class org.jbiowh.core.datasets.gene.genome.search.SearchGenePTT
-
Creates the GenePTT search object
- SearchKEGGCompound - Class in org.jbiowh.core.datasets.pathway.kegg.search
-
This Class perform the search over the KEGGCompound module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- SearchKEGGCompound() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGCompound
-
- SearchKEGGEnzyme - Class in org.jbiowh.core.datasets.pathway.kegg.search
-
This Class perform the search over the KEGGEnzyme module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- SearchKEGGEnzyme() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-
- SearchKEGGGene - Class in org.jbiowh.core.datasets.pathway.kegg.search
-
This Class perform the search over the KEGGGene module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- SearchKEGGGene() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- SearchKEGGGlycan - Class in org.jbiowh.core.datasets.pathway.kegg.search
-
This Class perform the search over the KEGGGlycan module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- SearchKEGGGlycan() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGlycan
-
- SearchKEGGPathway - Class in org.jbiowh.core.datasets.pathway.kegg.search
-
This class perform the search over the KEGGPathway module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- SearchKEGGPathway() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGPathway
-
- SearchKEGGReaction - Class in org.jbiowh.core.datasets.pathway.kegg.search
-
This Class perform the search over the KEGGReaction module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- SearchKEGGReaction() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGReaction
-
- SearchOMIM - Class in org.jbiowh.core.datasets.disease.omim.search
-
This Class perform the search over the OMIM module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- SearchOMIM() - Constructor for class org.jbiowh.core.datasets.disease.omim.search.SearchOMIM
-
- SearchOntology - Class in org.jbiowh.core.datasets.ontology.search
-
This Class perform the search over the Ontology module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-05-29 11:24:54 +0200 (Wed, 29 May 2013) $
$LastChangedRevision: 591 $
- SearchOntology() - Constructor for class org.jbiowh.core.datasets.ontology.search.SearchOntology
-
This Class perform the search over the Ontology module
- SearchPanel - Class in org.jbiowh.gui.component.panel
-
This JPanel is the Search interface
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-12-04 11:38:29 +0100
(Tue, 04 Dec 2012) $ $LastChangedRevision: 591 $
- SearchPanel(JComponent) - Constructor for class org.jbiowh.gui.component.panel.SearchPanel
-
Creates new form SearchPanel
- SearchPFam - Class in org.jbiowh.core.datasets.domain.pfam.search
-
This class perform the search over the PFam module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- SearchPFam() - Constructor for class org.jbiowh.core.datasets.domain.pfam.search.SearchPFam
-
- SearchProtein - Class in org.jbiowh.core.datasets.protein.search
-
This Class perform the search over the Protein module
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-12-27 15:38:46 +0100
(Thu, 27 Dec 2012) $ $LastChangedRevision: 591 $
- SearchProtein() - Constructor for class org.jbiowh.core.datasets.protein.search.SearchProtein
-
This Class perform the search over the Protein module
- SearchTaxonomy - Class in org.jbiowh.core.datasets.taxonomy.search
-
This Class perform the search over the Taxonomy module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- SearchTaxonomy() - Constructor for class org.jbiowh.core.datasets.taxonomy.search.SearchTaxonomy
-
This Class perform the search over the Taxonomy module
- SearchUniRef - Class in org.jbiowh.core.datasets.protclust.search
-
This Class perform the search over the UniRef module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- SearchUniRef() - Constructor for class org.jbiowh.core.datasets.protclust.search.SearchUniRef
-
This Class perform the search over the UniRef module
- SECONDARYACCESSIONNUMBER - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.SecondaryAccessionNumbersTags
-
- SECONDARYACCESSIONNUMBERS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.SecondaryAccessionNumbersTags
-
- SecondaryAccessionNumbersTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the SecondaryAccessionNumbers XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- selectAll() - Method in class org.jbiowh.gui.sqltables.listener.DataTypeComboBoxEditor
-
- selectCell(String) - Method in class org.jbiowh.gui.component.graph.EntityRelationshipDialog
-
- seq - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- Sequence - Class in org.jbiowh.core.datasets.protein.parser.xml
-
This Class handled the XML Sequence Tags on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- Sequence() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
This constructor initialize the WH file manager and the WH DataSet
manager
- sequence - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.Peptide
-
- sequenceCoverage - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
- SequenceTags - Class in org.jbiowh.core.datasets.protein.parser.xml.tags
-
This Class storage the XML Sequence Tags on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- SequenceTags() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.tags.SequenceTags
-
- SequenceTypeTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the SequenceType XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- SequenceTypeTags() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.SequenceTypeTags
-
- setAa(List<Aa>) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- setAa(List<Aa>) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Peptide
-
- setAbbreviation(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- setAbsorption(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setAbstract1(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamInterpro
-
- setAcc(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- setAccession(String) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankAccession
-
- setAccession(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.CvParamType
-
Sets the value of the accession property.
- setAccession(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
Sets the value of the accession property.
- setAccessionNumber(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSecondAccessionNumbers
-
- setAccessionNumber(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumberPK
-
- setAccessionNumber(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.MzData
-
Sets the value of the accessionNumber property.
- setAccessionVersion(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
Sets the value of the accessionVersion property.
- setAcqNumber(int) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType.AcqSpecification.Acquisition
-
Sets the value of the acqNumber property.
- setAcqSpecification(SpectrumSettingsType.AcqSpecification) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType
-
Sets the value of the acqSpecification property.
- setAct(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- setAction(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersActions
-
- setAction(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesActions
-
- setAction(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsActions
-
- setAction(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersActions
-
- setAction(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Form
-
Sets the value of the action property.
- setActivation(ParamType) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PrecursorType
-
Sets the value of the activation property.
- setAdditional(ParamType) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType
-
Sets the value of the additional property.
- setAdditional(ParamType) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.GelType
-
Sets the value of the additional property.
- setAdditional(ParamType) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
Sets the value of the additional property.
- setAdditional(ParamType) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.InstrumentDescriptionType
-
Sets the value of the additional property.
- setAdditional(ParamType) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Modification
-
Sets the value of the additional property.
- setAdditional(ParamType) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Peptide
-
Sets the value of the additional property.
- setAdditional(ParamType) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ReferenceType
-
Sets the value of the additional property.
- setAddress(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.CvLookupType
-
Sets the value of the address property.
- setAdmin(AdminType) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.MzData.Description
-
Sets the value of the admin property.
- setAffectedOrganisms(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAffectedOrganisms
-
- setAHFSCodes(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAHFSCodes
-
- setAI(boolean) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Set the column as AI
- setAlias(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setAliEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setAliEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setAliStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setAliStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setAlt(Alt) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Product
-
Sets the value of the alt property.
- setAlt(Alt) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Substrate
-
Sets the value of the alt property.
- setAltId(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeIdPK
-
- setAnalyzerList(InstrumentDescriptionType.AnalyzerList) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.InstrumentDescriptionType
-
Sets the value of the analyzerList property.
- setApplication(String) - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Set the DataSet's application name
- setApplicationVersion(String) - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Set the DataSet's application version
- setApproved(Date) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- setArchitecture(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- setArchitectureAcc(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- setArrayName(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDataBinaryType
-
Sets the value of the arrayName property.
- setArrayName(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDataType
-
Sets the value of the arrayName property.
- setAsMainSchema(String, boolean) - Method in class org.jbiowh.core.dbms.WHDBMS
-
Set the URL as main schema
- setAssembly(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- setAt(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aa
-
Sets the value of the at property.
- setAt(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aconflict
-
Sets the value of the at property.
- setAt(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Alink
-
Sets the value of the at property.
- setAt(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Amod
-
Sets the value of the at property.
- setAt(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Avariant
-
Sets the value of the at property.
- setAt(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Da
-
Sets the value of the at property.
- setAt(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dmod
-
Sets the value of the at property.
- setAt(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dstart
-
Sets the value of the at property.
- setAt(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dstop
-
Sets the value of the at property.
- setAt(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dvariant
-
Sets the value of the at property.
- setAt(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ra
-
Sets the value of the at property.
- setAt(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rmod
-
Sets the value of the at property.
- setAt(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rstart
-
Sets the value of the at property.
- setAt(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rstop
-
Sets the value of the at property.
- setAt(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rvariant
-
Sets the value of the at property.
- setATCCode(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankATCCodes
-
- setAttribType(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferencePropertyPK
-
- setAttribute(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setAttribValue(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferenceProperty
-
- setAuthor(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setAuthor(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- setAuthor(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- setAutoPfamseq(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setAutoPfamseq(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setAutoPfamseq(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeedPK
-
- setAutoPfamseq(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- setAutoPfamseq(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- setAutoPfamseq(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- setAutoPfamseq(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- setAutoPfamseq(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setAutoPfamseq(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegionsPK
-
- setAutoPfamseq(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqDisulphide
-
- setAutoPfamseq(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProteinPK
-
- setAutoPfamseq(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasUniProtId
-
- setAv(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMAV
-
- setAvailability(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailabilityPK
-
- setAvailabilityRef(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setAverageCoverage(Double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setAverageLength(Double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setB_ions(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- setB_score(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- setBackground(Color) - Method in class org.jbiowh.gui.component.tree.TreeSchemaRenderer
-
- setBase(Float) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setBeginIntervalBegin(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setBeginIntervalEnd(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setBeginPos(Integer) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- setBeginPosition(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setBeginStatus(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- setbGColor(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setBGColor(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setBgcolor(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Sets the value of the bgcolor property.
- setBiotransformation(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setBondEnd(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqDisulphide
-
- setBondStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqDisulphide
-
- setBrand(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankBrands
-
- setBuildMethod(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setcASNumber(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setCASNumber(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setCategory(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCategories
-
- setCd(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCDPK
-
- setCellEditable(boolean, int, int) - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
Set the editable field for the cell
- setCellEditable(boolean, int[], int[]) - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
Set the editable field for the cell
- setChain(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- setChain(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setChain(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- setChangeDate(Date) - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Set the DataSet's change date
- setChangeStatus(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setChecksum(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setChecksum(String) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- setChromosome(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setCigar(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setCigar(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setCigar(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- setCite(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- setCite(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- setCite(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- setCite(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- setCite(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- setCitId(int) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyUnParseCitation
-
- setCitKey(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyUnParseCitation
-
- setClanAcc(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setClanAuthor(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setClanComment(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setClanDescription(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setClanId(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setClass1(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- setClass1(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeClass
-
- setClass1(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanClass
-
- setClearance(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setCn(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCNPK
-
- setCode(String) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- setCode(String) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- setCode(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyDivision
-
- setCode(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- setCog(String) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- setCog(String) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- setCollection(Collection<T>) - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Set the collection
- setColumnNames(String[]) - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
Set the column's name
- setColumns(SQLTableColumns) - Method in class org.jbiowh.core.dbms.sql.SQLTable
-
Set the table's columns
- setColumns(ConcurrentHashMap<String, SQLTableIndexColumn>) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Set the index's columns
- setComment(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setComment(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- setComment(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- setComment(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- setComment(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- setComment(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setComment(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setComment(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setComment(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setComment(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setComment(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyDivision
-
- setComment(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.DescriptionType
-
Sets the value of the comment property.
- setComments(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setComments(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SoftwareType
-
Sets the value of the comments property.
- setComp(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Gene
-
Sets the value of the comp property.
- setComp(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Protein
-
Sets the value of the comp property.
- setComp(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Subunit
-
Sets the value of the comp property.
- setCompeted(Boolean) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setCompletionTime(XMLGregorianCalendar) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SoftwareType
-
Sets the value of the completionTime property.
- setComponent(Boolean) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- setComposition(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setConn(Connection) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Set the MySQL connection
- setConn(Connection) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Set the MySQL connection
- setConstrains(List) - Method in class org.jbiowh.core.utility.constrains.JPLConstrains
-
Set the constrains
- setConstrains(JPLConstrains) - Method in class org.jbiowh.gui.component.table.model.ConstrainsTableModel
-
- setContactInfo(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PersonType
-
Sets the value of the contactInfo property.
- setContents(List<List<Object>>) - Method in class org.jbiowh.gui.component.table.model.ListTableModel
-
Set the data object
- setCoord(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setCoords(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Sets the value of the coords property.
- setCost(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- setCount(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- setCount(int) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.MzData.SpectrumList
-
Sets the value of the count property.
- setCount(int) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.InstrumentDescriptionType.AnalyzerList
-
Sets the value of the count property.
- setCount(int) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumDescType.PrecursorList
-
Sets the value of the count property.
- setCount(int) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType.AcqSpecification
-
Sets the value of the count property.
- setCountry(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- setCreated(Date) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setCreated(Date) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setCreated(Date) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setCreated(Date) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setCs(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- setCurrency(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- setCurrent(int) - Method in class org.jbiowh.core.datasets.gene.genome.utils.Chromosome
-
Set the index position to the index
- setCurrent(GenePTT) - Method in class org.jbiowh.core.datasets.gene.genome.utils.Chromosome
-
Set the current gene to the GenePTT (gene) object
- setCvLabel(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.CvLookupType
-
Sets the value of the cvLabel property.
- setCvLabel(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.CvParamType
-
Sets the value of the cvLabel property.
- setCytogLoc(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setCytogLog(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- setData(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCSData
-
- setData(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- setData(String) - Method in class org.jbiowh.core.datasets.protein.parser.xml.EvidencedStringType
-
- setData(List<FastaEntry>) - Method in class org.jbiowh.core.utility.fileformats.fasta.FastaReader
-
Set the fasta list
- setData(PeakListBinaryType.Data) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PeakListBinaryType
-
Sets the value of the data property.
- setData(PeakListBinaryType.Data) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDataBinaryType
-
Sets the value of the data property.
- setData(List) - Method in class org.jbiowh.gui.component.table.model.data.ExtendedModelData
-
Set the data list
- setDatabase(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
Sets the value of the database property.
- setDatabaseVersion(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
Sets the value of the databaseVersion property.
- setDataProcessing(DataProcessingType) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.MzData.Description
-
Sets the value of the dataProcessing property.
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- setDataset(DataSet) - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Set the DataSet object loaded
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setDataSetIn(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneRefSeqUniprot
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setDate(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- setDay(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setDb(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLinkPK
-
- setDb(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLinkPK
-
- setDb(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLinkPK
-
- setDb(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLinkPK
-
- setDb(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setDb(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setDb(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setDb(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setDb(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setdBAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setDBAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setdBAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setDBAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setdBAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setDBAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setdBAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setDBAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setdBAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setDBAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setDbId(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- setDbId(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- setdBIdent(String) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDSDBXref
-
- setDbLink(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- setDbLink(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- setDBName(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoDBXrefsPK
-
- setDBName(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- setdBXref(String) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDSDBXref
-
- setDef(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setDef(Object) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Set the column's default value
- setDefinition(String) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- setDefinition(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setDefinition(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setDelta(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- setDepositedBy(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setDepositedBy(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setDescription(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setDescription(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDescription(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractions
-
- setDescription(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- setDescription(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setDescription(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- setDescription(ExperimentType.MzData.Description) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.MzData
-
Sets the value of the description property.
- setDetector(ParamType) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.InstrumentDescriptionType
-
Sets the value of the detector property.
- setDirectory(String) - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Set the data source directory
- setDisease(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- setDisorder(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- setDisplayed(List) - Method in class org.jbiowh.gui.component.table.model.data.ExtendedModelData
-
Set the displayed list
- setDivision(String) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- setDivision(TaxonomyDivision) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setDomain(Boolean) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- setDomain(List<Ddomain>) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Peptide
-
- setDomainBitsScore(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setDomainBitsScore(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setDomainBitsScore(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setDomainEvalueScore(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setDomainEvalueScore(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setDomainEvalueScore(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setDomainGA(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setDomainNC(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setDomainOder(Short) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setDomainOrder(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setDomainScore(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- setDomainTC(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setDriver(String) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Set the MySQL JAVA driver
- setDriver(String) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Set the MySQL JAVA driver
- setDroptables(boolean) - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Set the drop tables parameter
- setDrug(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractionsPK
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAffectedOrganisms
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAHFSCodes
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankATCCodes
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankBrands
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- setDrugBank(Set<DrugBank>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCategories
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractions
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankFoodInteractions
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGroup
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- setDrugBank(Set<DrugBank>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSecondAccessionNumbers
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSynonyms
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomy
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- setDrugBank(Set<DrugBank>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setDrugBankAffectedOrganisms(Set<DrugBankAffectedOrganisms>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankAHFSCodes(Set<DrugBankAHFSCodes>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankAsCarriers(Set<DrugBank>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setDrugBankAsEnzyme(Set<DrugBank>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setDrugBankAsTransporters(Set<DrugBank>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setDrugBankATCCodes(Set<DrugBankATCCodes>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankBrands(Set<DrugBankBrands>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankCalculatedProperties(Set<DrugBankCalculatedProperties>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankCarriers(Set<DrugBankCarriers>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankCarriers(DrugBankCarriers) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersActions
-
- setDrugBankCarriers(DrugBankCarriers) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- setDrugBankCarriersActions(Set<DrugBankCarriersActions>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- setDrugBankCarriersRef(Set<DrugBankCarriersRef>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- setDrugBankCarriersWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersActions
-
- setDrugBankCarriersWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- setDrugBankCategories(Set<DrugBankCategories>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankDosages(Set<DrugBankDosages>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankDrugInteractions(Map<DrugBankDrugInteractionsPK, DrugBankDrugInteractions>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankDrugInteractionsPK(DrugBankDrugInteractionsPK) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractions
-
- setDrugBankEnzymes(Set<DrugBankEnzymes>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankEnzymes(DrugBankEnzymes) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesActions
-
- setDrugBankEnzymes(DrugBankEnzymes) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- setDrugBankEnzymesActions(Set<DrugBankEnzymesActions>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- setDrugBankEnzymesRef(Set<DrugBankEnzymesRef>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- setDrugBankEnzymesWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesActions
-
- setDrugBankEnzymesWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- setDrugBankExperimentalProperties(Set<DrugBankExperimentalProperties>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankExternalIdentifiers(Set<DrugBankExternalIdentifiers>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankExternalLinks(Set<DrugBankExternalLinks>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankFoodInteractions(Set<DrugBankFoodInteractions>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankGeneralRef(Set<DrugBankGeneralRef>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankGroup(Set<DrugBankGroup>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankManufacturers(Set<DrugBankManufacturers>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankMixtures(Set<DrugBankMixtures>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankPackagers(Set<DrugBankPackagers>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankPatents(Set<DrugBankPatents>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankPrices(Set<DrugBankPrices>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankProteinSequences(Set<DrugBankProteinSequences>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBanks(Set<DrugBank>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setDrugBankSecondAccessionNumbers(Set<DrugBankSecondAccessionNumbers>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankSynonyms(Set<DrugBankSynonyms>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankTargets(Set<DrugBankTargets>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankTargets(DrugBankTargets) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsActions
-
- setDrugBankTargets(DrugBankTargets) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- setDrugBankTargetsActions(Set<DrugBankTargetsActions>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- setDrugBankTargetsRef(Set<DrugBankTargetsRef>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- setDrugBankTargetsWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsActions
-
- setDrugBankTargetsWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- setDrugBankTaxonomy(Set<DrugBankTaxonomy>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankTaxonomySubstructures(Set<DrugBankTaxonomySubstructures>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankTransporters(Set<DrugBankTransporters>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankTransporters(DrugBankTransporters) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersActions
-
- setDrugBankTransporters(DrugBankTransporters) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- setDrugBankTransportersActions(Set<DrugBankTransportersActions>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- setDrugBankTransportersRef(Set<DrugBankTransportersRef>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- setDrugBankTransportersWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersActions
-
- setDrugBankTransportersWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAffectedOrganisms
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAHFSCodes
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankATCCodes
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankBrands
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractionsPK
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankFoodInteractions
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGroup
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSecondAccessionNumbers
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSynonyms
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomy
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- setDsspCode(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setEd(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMEDPK
-
- setEdit(boolean[]) - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
Set the default edit array for each column
- setEditCell(List<List<Boolean>>) - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
Set the edit matrix for all the cells
- setElement(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- seteMBLCode(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setEnd(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
Sets the value of the end property.
- setEnd(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dna
-
Sets the value of the end property.
- setEnd(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Domain
-
Sets the value of the end property.
- setEnd(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Exon
-
Sets the value of the end property.
- setEnd(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Gene
-
Sets the value of the end property.
- setEnd(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Intron
-
Sets the value of the end property.
- setEnd(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Locus
-
Sets the value of the end property.
- setEnd(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Peptide
-
Sets the value of the end property.
- setEnd(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Promotor
-
Sets the value of the end property.
- setEnd(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rdomain
-
Sets the value of the end property.
- setEnd(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rna
-
Sets the value of the end property.
- setEnd(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.StsDomain
-
Sets the value of the end property.
- setEnd(BigInteger) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Peptide
-
Sets the value of the end property.
- setEndFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setEndian(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PeakListBinaryType.Data
-
Sets the value of the endian property.
- setEndIntervalBegin(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setEndIntervalEnd(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setEndPos(Integer) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- setEndPosition(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setEndPositionOnTheGenomicAccession(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- setEndShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setEndStatus(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- setEngine(String) - Method in class org.jbiowh.core.dbms.sql.SQLTable
-
Set the table's engine
- setEnsemblGeneIdentifier(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Ensembl
-
- setEnsemblProteinIdentifier(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Ensembl
-
- setEnsemblRNAIdentifier(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Ensembl
-
- setEntries(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTarget
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthologyPK
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthologyPK
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setEntry(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.DbEntry
-
Sets the value of the entry property.
- setEntry1(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Relation
-
Sets the value of the entry1 property.
- setEntry2(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Relation
-
Sets the value of the entry2 property.
- setEquation(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setError(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setEventType(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEventPK
-
- setEvidence(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setEvidence(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- setEvidence(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- setEvidence(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- setEvidence(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- setEvidence(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformName
-
- setEvidence(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- setEvidence(String) - Method in class org.jbiowh.core.datasets.protein.parser.xml.EvidencedStringType
-
- setExistence(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setExpect(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- setExpect(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- setExpect(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Protein
-
- setExperiment(ExperimentType) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ProjectList
-
Sets the value of the experiment property.
- setExperimentAccession(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType
-
Sets the value of the experimentAccession property.
- setExperimentRef(int) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRefPK
-
- setExperimentRef(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setExperiments(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setExpires(Date) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- setExponent(Float) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setFactor(Float) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setfGColor(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setFGColor(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setFgcolor(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Sets the value of the fgcolor property.
- setfI(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- setFields(HashMap<String, Class>) - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Set the available search fields
- setFileName(String) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- setFileType(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SourceFileType
-
Sets the value of the fileType property.
- setFill(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.OpenCvType
-
- setFoodInteractions(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankFoodInteractions
-
- setForm(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- setFormat(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Binary
-
Sets the value of the format property.
- setFormat(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Data
-
Sets the value of the format property.
- setFormat(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.DbEntry
-
Sets the value of the format property.
- setFormat(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.File
-
Sets the value of the format property.
- setFormula(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setForwardLambda(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setForwardTau(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setFragment(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setFragment(String) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- setFullConsensus(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantBiologicalRole
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setFullName(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.CvLookupType
-
Sets the value of the fullName property.
- setFullNameFromNomenclatureAuthority(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setGel(SimpleGel) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.TwoDimensionalIdentificationType
-
Sets the value of the gel property.
- setGelLink(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.GelType
-
Sets the value of the gelLink property.
- setGelLocation(Point) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.TwoDimensionalIdentificationType
-
Sets the value of the gelLocation property.
- setGencode(TaxonomyGenCode) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setGenCodeId(int) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- setGene(String) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- setGene(String) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankFeatures
-
- setGene2Accession(Map<Gene2AccessionPK, Gene2Accession>) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setGene2AccessionPK(Gene2AccessionPK) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- setGene2Ensembl(Set<Gene2Ensembl>) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setGene2PMID(Map<Gene2PMIDPK, Gene2PMID>) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setGene2PMIDPK(Gene2PMIDPK) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2PMID
-
- setGene2STS(Map<Gene2STSPK, Gene2STS>) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setGene2STSPK(Gene2STSPK) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2STS
-
- setGene2UniGene(Map<Gene2UniGenePK, Gene2UniGene>) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setGene2UniGenePK(Gene2UniGenePK) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2UniGene
-
- setGeneBank(GeneBank) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- setGeneBankAccessions(Collection<GeneBankAccession>) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- setGeneBankCDSDBXrefs(Collection<GeneBankCDSDBXref>) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- setGeneBankCDSs(Set<GeneBankCDS>) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- setGeneBankFeatureses(Collection<GeneBankFeatures>) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- setGeneBankWID(long) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- setGeneGroup(Map<GeneGroupPK, GeneGroup>) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setGeneGroupPK(GeneGroupPK) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneGroup
-
- setGeneId(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setGeneID(long) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setGeneInfo(GeneInfo) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- setGeneInfo(GeneInfo) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Ensembl
-
- setGeneInfo(GeneInfo) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2PMID
-
- setGeneInfo(GeneInfo) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2STS
-
- setGeneInfo(GeneInfo) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2UniGene
-
- setGeneInfo(GeneInfo) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneGroup
-
- setGeneInfo(GeneInfo) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoDBXrefs
-
- setGeneInfo(GeneInfo) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoSynonyms
-
- setGeneInfo(Set<GeneInfo>) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- setGeneInfo(GeneInfo) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- setGeneInfo(GeneInfo) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- setGeneInfo(Set<GeneInfo>) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setGeneInfo(Set<GeneInfo>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setGeneInfo(Set<GeneInfo>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setGeneInfoDBXrefs(Map<GeneInfoDBXrefsPK, GeneInfoDBXrefs>) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setGeneInfoDBXrefsPK(GeneInfoDBXrefsPK) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoDBXrefs
-
- setGeneInfos(Set<GeneInfo>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setGeneInfos(Set<GeneInfo>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setGeneInfoSynonyms(Map<GeneInfoSynonymsPK, GeneInfoSynonyms>) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setGeneInfoSynonymsPK(GeneInfoSynonymsPK) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoSynonyms
-
- setGeneInfoWID(long) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2AccessionPK
-
- setGeneInfoWID(long) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Ensembl
-
- setGeneInfoWID(long) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2PMIDPK
-
- setGeneInfoWID(long) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2STSPK
-
- setGeneInfoWID(long) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2UniGenePK
-
- setGeneInfoWID(long) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneGroupPK
-
- setGeneInfoWID(long) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoDBXrefsPK
-
- setGeneInfoWID(long) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoSynonymsPK
-
- setGeneLocusTag(String) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- setGeneLocusTag(String) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- setGenePTT(GenePTT) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setGenePTT(GenePTT) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- setGenePTT(GenePTT) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setGenePTTs(List<GenePTT>) - Method in class org.jbiowh.core.datasets.gene.genome.utils.Chromosome
-
Set the list of genes on the chromosome.
- setGeneRefSeqUniprotPK(GeneRefSeqUniprotPK) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneRefSeqUniprot
-
- setGeneric(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- setGeneRNT(Set<GeneRNT>) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setGeneStatus(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setGeneSymbol(String) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- setGeneSymbol(String) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- setGenomicNucleotideAccession(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- setGenomicNucleotideAccessionVersion(Integer) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- setGenomicNucleotideGi(BigInteger) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- setGenomicNucleotideGi(long) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- setGi(int) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- setGi(Long) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankFeatures
-
- setGi(BigInteger) - Method in class org.jbiowh.tools.gene.PTTData
-
- setGroup(List<Group>) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- setGrouping(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setGroupName(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGroup
-
- setHalfLife(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setHeader(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- setHeader(String) - Method in class org.jbiowh.core.utility.fileformats.fasta.FastaEntry
-
Set the header
- setHeight(Integer) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setHeight(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Sets the value of the height property.
- setHexColour(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- setHomeURL(String) - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Set the DataSet's Home URL
- setHyperscore(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- setId(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setId(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoDBXrefsPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setId(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySubset
-
- setId(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLinkPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLinkPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLinkPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLinkPK
-
- setId(int) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- setId(int) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- setId(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Component
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Product
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Reaction
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Substrate
-
Sets the value of the id property.
- setId(int) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setId(int) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setId(int) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setId(int) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setId(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- setId(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setId(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setId(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setId(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setId(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setId(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setId(String) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- setId(String) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCycPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIPPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBankPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinECPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntActPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformIdPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGGPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKeyword
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINTPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDBPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAMPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMIDPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeqPK
-
- setId(int) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyDivision
-
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aa
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aconflict
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Alink
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Amod
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Author
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Avariant
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Binary
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.BookTitle
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Cell
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Chromosome
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Clone
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.CommonName
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Copyright
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Da
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Data
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.DbEntry
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dmod
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dna
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Domain
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dstart
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dstop
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dvariant
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Editor
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Exon
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.File
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Form
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Gene
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Homolog
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Input
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Intron
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Journal
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Locus
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Name
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Note
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Organelle
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Organism
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Pages
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Particle
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Peptide
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Plasmid
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Promotor
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Protein
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ra
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rdomain
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Reference
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rmod
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rna
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rstart
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rstop
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rvariant
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Species
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.StsDomain
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Subunit
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Taxon
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Text
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Tissue
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Title
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Volume
-
Sets the value of the id property.
- setId(int) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumType
-
Sets the value of the id property.
- setId(int) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDataBinaryType
-
Sets the value of the id property.
- setId(int) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDataType
-
Sets the value of the id property.
- setId1(int) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- setId2(int) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- setIdentifier(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- setIds(Map<String, List<String>>) - Method in class org.jbiowh.core.utility.fileformats.fasta.FastaEntry
-
Set the Ids map
- setImage(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setImage(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Sets the value of the image property.
- setImexId(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setIndexed(boolean) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDataType
-
Sets the value of the indexed property.
- setIndexes(SQLTableIndexes) - Method in class org.jbiowh.core.dbms.sql.SQLTable
-
Set the table's indexes
- setIndexName(String) - Method in class org.jbiowh.gui.component.table.model.CreateTableColumnModel
-
Set the active index's name showed on the Index Column table
- setIndication(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setInFull(short) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setInFull(short) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setIngredients(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- setInheritedDivision(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setInheritedGencode(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setInheritedMCGencode(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setInstitution(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PersonType
-
Sets the value of the institution property.
- setInstrument(InstrumentDescriptionType) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.MzData.Description
-
Sets the value of the instrument property.
- setInstrumentName(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.InstrumentDescriptionType
-
Sets the value of the instrumentName property.
- setIntactID(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- setIntenArrayBinary(PeakListBinaryType) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumType
-
Sets the value of the intenArrayBinary property.
- setInteractionRef(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setInteractorRef(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setInteractorRef(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- setInterproId(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamInterpro
-
- setIntraMolecular(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setIonSelection(ParamType) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PrecursorType
-
Sets the value of the ionSelection property.
- setIsAOntology(Ontology) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsA
-
- setIsAOntologyWID(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsAPK
-
- setIsLink(Boolean) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setIsObsolete(boolean) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setIsRepresentative(Boolean) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setItem(Object) - Method in class org.jbiowh.gui.sqltables.listener.DataTypeComboBoxEditor
-
- setJbiowhSchema(boolean) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
- setJbiowhSchema(boolean) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Set to true if this connection belongs to a JBioWH default schema
- setJournal(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- setjTViewColumn(List<List<Object>>, int) - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Set the Link Table format
- setkEGGCompound(KEGGCompound) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLink
-
- setkEGGCompound(KEGGCompound) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- setkEGGCompound(Set<KEGGCompound>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- setkEGGCompoundAsCofactor(Set<KEGGCompound>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setkEGGCompoundAsEffector(Set<KEGGCompound>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setkEGGCompoundAsInhibitor(Set<KEGGCompound>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setkEGGCompoundAsProduct(Set<KEGGCompound>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setkEGGCompoundAsSubstrate(Set<KEGGCompound>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setkEGGCompoundDBLink(Map<KEGGCompoundDBLinkPK, KEGGCompoundDBLink>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setKEGGCompoundDBLinkPK(KEGGCompoundDBLinkPK) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLink
-
- setkEGGCompoundName(Set<KEGGCompoundName>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setkEGGCompounds(Set<KEGGCompound>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setkEGGCompounds(Set<KEGGCompound>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setKEGGCompoundWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLinkPK
-
- setkEGGCompoundWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- setKEGGCompoundWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- setkEGGEnzyme(KEGGEnzyme) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLink
-
- setkEGGEnzyme(KEGGEnzyme) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- setkEGGEnzyme(KEGGEnzyme) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthology
-
- setkEGGEnzyme(KEGGEnzyme) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- setkEGGEnzyme(Set<KEGGEnzyme>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setkEGGEnzymeAsCofactor(Set<KEGGEnzyme>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setkEGGEnzymeAsEffector(Set<KEGGEnzyme>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setkEGGEnzymeAsInhibitor(Set<KEGGEnzyme>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setkEGGEnzymeClass(Set<KEGGEnzymeClass>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setkEGGEnzymeDBLink(Map<KEGGEnzymeDBLinkPK, KEGGEnzymeDBLink>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setKEGGEnzymeDBLinkPK(KEGGEnzymeDBLinkPK) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLink
-
- setkEGGEnzymeName(Set<KEGGEnzymeName>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setkEGGEnzymeOrthology(Map<KEGGEnzymeOrthologyPK, KEGGEnzymeOrthology>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setKEGGEnzymeOrthologyPK(KEGGEnzymeOrthologyPK) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthology
-
- setkEGGEnzymes(Set<KEGGEnzyme>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setkEGGEnzymes(Set<KEGGEnzyme>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setkEGGEnzymeSysName(Set<KEGGEnzymeSysName>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setKEGGEnzymeWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLinkPK
-
- setkEGGEnzymeWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- setKEGGEnzymeWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- setKEGGEnzymeWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthologyPK
-
- setkEGGEnzymeWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- setKEGGEnzymeWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- setkEGGGene(KEGGGene) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLink
-
- setkEGGGene(KEGGGene) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- setkEGGGene(KEGGGene) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTarget
-
- setkEGGGene(KEGGGene) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- setkEGGGene(KEGGGene) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthology
-
- setkEGGGeneDBLink(Map<KEGGGeneDBLinkPK, KEGGGeneDBLink>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setKegggenedblinkPK(KEGGGeneDBLinkPK) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLink
-
- setKEGGGeneDBLinkPK(KEGGGeneDBLinkPK) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLink
-
- setkEGGGeneDisease(Set<KEGGGeneDisease>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setkEGGGeneDrugTarget(Map<KEGGGeneDrugTargetPK, KEGGGeneDrugTarget>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setKEGGGeneDrugTargetPK(KEGGGeneDrugTargetPK) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTarget
-
- setkEGGGeneName(Set<KEGGGeneName>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setkEGGGeneOrthology(Map<KEGGGeneOrthologyPK, KEGGGeneOrthology>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setKEGGGeneOrthologyPK(KEGGGeneOrthologyPK) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthology
-
- setkEGGGenes(Set<KEGGGene>) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setkEGGGenes(Set<KEGGGene>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setKEGGGeneWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLinkPK
-
- setkEGGGeneWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- setKEGGGeneWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- setKEGGGeneWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTargetPK
-
- setkEGGGeneWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- setKEGGGeneWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- setKEGGGeneWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthologyPK
-
- setkEGGGlycan(KEGGGlycan) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLink
-
- setkEGGGlycan(KEGGGlycan) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- setkEGGGlycanAsProduct(Set<KEGGGlycan>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setkEGGGlycanAsSubstrate(Set<KEGGGlycan>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setkEGGGlycanClass(Set<KEGGGlycanClass>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setkEGGGlycanDBLink(Map<KEGGGlycanDBLinkPK, KEGGGlycanDBLink>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setKeggglycandblinkPK(KEGGGlycanDBLinkPK) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLink
-
- setKEGGGlycanDBLinkPK(KEGGGlycanDBLinkPK) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLink
-
- setkEGGGlycanName(Set<KEGGGlycanName>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setKEGGGlycanWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLinkPK
-
- setkEGGGlycanWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- setKEGGGlycanWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- setkEGGPathway(KEGGPathway) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- setkEGGPathway(KEGGPathway) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- setkEGGPathway(KEGGPathway) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- setkEGGPathwayEntry(Set<KEGGPathwayEntry>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setkEGGPathwayEntry(KEGGPathwayEntry) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setkEGGPathwayEntryGraphic(Set<KEGGPathwayEntryGraphic>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- setkEGGPathwayEntryWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setKEGGPathwayEntryWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setkEGGPathwayReaction(Set<KEGGPathwayReaction>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setkEGGPathwayRelation(Set<KEGGPathwayRelation>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setkEGGPathwayRelation(KEGGPathwayRelation) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubType
-
- setkEGGPathwayRelationSubType(Map<KEGGPathwayRelationSubTypePK, KEGGPathwayRelationSubType>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- setKeggpathwayrelationsubtypePK(KEGGPathwayRelationSubTypePK) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubType
-
- setKEGGPathwayRelationWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubTypePK
-
- setkEGGPathways(Set<KEGGPathway>) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setkEGGPathways(Set<KEGGPathway>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setkEGGPathways(Set<KEGGPathway>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setkEGGPathways(Set<KEGGPathway>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setkEGGPathways(Set<KEGGPathway>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setkEGGPathways(Set<KEGGPathway>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setkEGGPathwayWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- setKEGGPathwayWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- setkEGGPathwayWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- setKEGGPathwayWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- setkEGGPathwayWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- setKEGGPathwayWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- setkEGGReaction(Set<KEGGReaction>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setkEGGReaction(KEGGReaction) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- setkEGGReactionAsProduct(Set<KEGGReaction>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setkEGGReactionAsProduct(Set<KEGGReaction>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setkEGGReactionAsSubstrate(Set<KEGGReaction>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setkEGGReactionAsSubstrate(Set<KEGGReaction>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setkEGGReactionName(Set<KEGGReactionName>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setkEGGReactions(Set<KEGGReaction>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setkEGGReactionWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- setKEGGReactionWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- setkEGGRPair(Set<KEGGRPair>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setKeyName(String) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankFeatures
-
- setKeyword(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKeyword
-
- setKeywords(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- setKind(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- setKind(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- setKingdom(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomy
-
- setKnownAction(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- setLabel(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamMarkupKey
-
- setLabel(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aa
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aconflict
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Alink
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Amod
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Author
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Avariant
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Binary
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Bioml
-
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.BookTitle
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Cell
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Chromosome
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Clone
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.CommonName
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Copyright
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Da
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Data
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.DbEntry
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dmod
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dna
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Domain
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dstart
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dstop
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dvariant
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Editor
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Exon
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.File
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Form
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Gene
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Homolog
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Input
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Intron
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Journal
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Locus
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Name
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Note
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Organelle
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Organism
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Pages
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Particle
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Peptide
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Plasmid
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Promotor
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Protein
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ra
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rdomain
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Reference
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rmod
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rna
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rstart
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rstop
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rvariant
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Species
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.StsDomain
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Subunit
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Taxon
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Text
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Tissue
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Title
-
Sets the value of the label property.
- setLabel(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Volume
-
Sets the value of the label property.
- setLength(String) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- setLength(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexColumn
-
Set the column's length
- setLength(int) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PeakListBinaryType.Data
-
Sets the value of the length property.
- setLength(int) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDataType
-
Sets the value of the length property.
- setLevel(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- setLevel(int) - Method in class org.jbiowh.core.logger.VerbLogger
-
Set the information level to print the messages
- setLink(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- setLink(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- setLink(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- setLink(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- setLink(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- setLink(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setLink(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- setLink(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Sets the value of the link property.
- setLink(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Sets the value of the link property.
- setLoadDate(Date) - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Set the DataSet's load date
- setLoadedBy(String) - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Set the DataSet's load user
- setLocation(String) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- setLocation(String) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- setLocation(String) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankFeatures
-
- setLocation(String) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- setLocation(String) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- setLocationType(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setLocusName(String) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- setLocusTag(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setLocusTag(String) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- setManufacturer(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- setMapLocation(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setMass(Float) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setMass(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setMass(Integer) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setMass(Float) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setMass(String) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- setMaxI(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- setMcgencode(TaxonomyGenCode) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setMechanismOfAction(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setMethod(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMethod
-
- setMethod(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- setMethod(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setMethodOfCombination(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType.AcqSpecification
-
Sets the value of the methodOfCombination property.
- setMh(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- setMh(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- setMifBioSourceTypeCellType(MIFBioSourceTypeCellType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifBioSourceTypeCellType(MIFBioSourceTypeCellType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifBioSourceTypeCellType(Set<MIFBioSourceTypeCellType>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setMifBioSourceTypeCellType(MIFBioSourceTypeCellType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifBioSourceTypeCellType(MIFBioSourceTypeCellType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifBioSourceTypeCellType(MIFBioSourceTypeCellType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifBioSourceTypeCellType(MIFBioSourceTypeCellType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifBioSourceTypeCellType(MIFBioSourceTypeCellType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifBioSourceTypeCompartment(MIFBioSourceTypeCompartment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifBioSourceTypeCompartment(MIFBioSourceTypeCompartment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifBioSourceTypeCompartment(Set<MIFBioSourceTypeCompartment>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setMifBioSourceTypeCompartment(MIFBioSourceTypeCompartment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifBioSourceTypeCompartment(MIFBioSourceTypeCompartment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifBioSourceTypeCompartment(MIFBioSourceTypeCompartment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifBioSourceTypeCompartment(MIFBioSourceTypeCompartment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifBioSourceTypeCompartment(MIFBioSourceTypeCompartment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifBioSourceTypeTissue(MIFBioSourceTypeTissue) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifBioSourceTypeTissue(MIFBioSourceTypeTissue) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifBioSourceTypeTissue(MIFBioSourceTypeTissue) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifBioSourceTypeTissue(MIFBioSourceTypeTissue) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifBioSourceTypeTissue(MIFBioSourceTypeTissue) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifBioSourceTypeTissue(MIFBioSourceTypeTissue) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifBioSourceTypeTissue(MIFBioSourceTypeTissue) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifBioSourceTypeTissueD(Set<MIFBioSourceTypeTissue>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setMifEntryExperiment(Set<MIFEntryExperiment>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifEntryExperiment(Set<MIFEntryExperiment>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setmIFEntryExperimentWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setMIFEntryExperimentWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setmIFEntryExperimentWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setMIFEntryExperimentWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setmIFEntryExperimentWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setMIFEntryExperimentWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifEntryInteraction(Set<MIFEntryInteraction>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setmIFEntryInteraction(Set<MIFEntryInteraction>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setmIFEntryInteractionWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- setMIFEntryInteractionWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- setmIFEntryInteractionWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setMIFEntryInteractionWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setmIFEntryInteractionWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMIFEntryInteractionWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifEntryInteractor(Set<MIFEntryInteractor>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- setMifEntryInteractor(Set<MIFEntryInteractor>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifEntryInteractor(MIFEntryInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setMifEntryInteractor(MIFEntryInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifEntryInteractor(MIFEntryInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifEntryInteractor(MIFEntryInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setMifEntryInteractor(MIFEntryInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifEntryInteractor(MIFEntryInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifEntryInteractor(MIFEntryInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifEntryInteractor(MIFEntryInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifEntryInteractor(MIFEntryInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifEntryInteractor(Set<MIFEntryInteractor>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- setmIFEntryInteractorWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setMIFEntryInteractorWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setmIFEntrySet(MIFEntrySet) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- setMifEntrySetEntry(MIFEntrySetEntry) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setmIFEntrySetEntry(MIFEntrySetEntry) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifEntrySetEntry(MIFEntrySetEntry) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setmIFEntrySetEntry(Set<MIFEntrySetEntry>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- setmIFEntrySetEntry(MIFEntrySetEntry) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setmIFEntrySetEntryWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMIFEntrySetEntryWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setmIFEntrySetEntryWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setmIFEntrySetEntryWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setMIFEntrySetEntryWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setmIFEntrySetEntryWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setMIFEntrySetEntryWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setmIFEntrySetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- setMifEntrySource(Set<MIFEntrySource>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- setMifEntrySource(MIFEntrySource) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifEntrySource(MIFEntrySource) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifEntrySource(MIFEntrySource) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- setMifEntrySource(MIFEntrySource) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifExperimentFeatDetecMethod(Set<MIFExperimentFeatDetecMethod>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifExperimentFeatDetecMethod(MIFExperimentFeatDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifExperimentFeatDetecMethod(MIFExperimentFeatDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifExperimentFeatDetecMethod(MIFExperimentFeatDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifExperimentFeatDetecMethod(MIFExperimentFeatDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifExperimentFeatDetecMethod(MIFExperimentFeatDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifExperimentFeatDetecMethod(MIFExperimentFeatDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifExperimentInterDetecMethod(Set<MIFExperimentInterDetecMethod>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifExperimentInterDetecMethod(MIFExperimentInterDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifExperimentInterDetecMethod(MIFExperimentInterDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifExperimentInterDetecMethod(MIFExperimentInterDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifExperimentInterDetecMethod(MIFExperimentInterDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifExperimentInterDetecMethod(MIFExperimentInterDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifExperimentInterDetecMethod(MIFExperimentInterDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifExperimentPartIdentMethod(Set<MIFExperimentPartIdentMethod>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifExperimentPartIdentMethod(MIFExperimentPartIdentMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifExperimentPartIdentMethod(MIFExperimentPartIdentMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifExperimentPartIdentMethod(MIFExperimentPartIdentMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifExperimentPartIdentMethod(MIFExperimentPartIdentMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifExperimentPartIdentMethod(MIFExperimentPartIdentMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifExperimentPartIdentMethod(MIFExperimentPartIdentMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifFeatureFeatDetMeth(MIFFeatureFeatDetMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifFeatureFeatDetMeth(MIFFeatureFeatDetMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifFeatureFeatDetMeth(MIFFeatureFeatDetMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifFeatureFeatDetMeth(MIFFeatureFeatDetMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifFeatureFeatDetMeth(MIFFeatureFeatDetMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifFeatureFeatDetMeth(MIFFeatureFeatDetMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifFeatureFeatDetMeth(Set<MIFFeatureFeatDetMeth>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifFeatureFeatureRange(Set<MIFFeatureFeatureRange>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifFeatureFeatureType(MIFFeatureFeatureType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifFeatureFeatureType(MIFFeatureFeatureType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifFeatureFeatureType(MIFFeatureFeatureType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifFeatureFeatureType(MIFFeatureFeatureType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifFeatureFeatureType(MIFFeatureFeatureType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifFeatureFeatureType(MIFFeatureFeatureType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifFeatureFeatureType(Set<MIFFeatureFeatureType>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifInferredInteractionParticipant(Map<MIFInferredInteractionParticipantPK, MIFInferredInteractionParticipant>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- setMIFInferredInteractionParticipantPK(MIFInferredInteractionParticipantPK) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipant
-
- setmIFInferredInteractionParticipantPK(MIFInferredInteractionParticipantPK) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipant
-
- setMifInteractionInferredInteraction(Set<MIFInteractionInferredInteraction>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifInteractionInferredInteraction(MIFInteractionInferredInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipant
-
- setMifInteractionInferredInteraction(MIFInteractionInferredInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- setMIFInteractionInferredInteractionWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipantPK
-
- setMifInteractionInteractionType(Set<MIFInteractionInteractionType>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifInteractionInteractionType(MIFInteractionInteractionType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifInteractionInteractionType(MIFInteractionInteractionType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifInteractionInteractionType(MIFInteractionInteractionType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifInteractionInteractionType(MIFInteractionInteractionType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifInteractionInteractionType(MIFInteractionInteractionType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifInteractionInteractionType(MIFInteractionInteractionType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifInteractionParticipant(Set<MIFInteractionParticipant>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setMIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantBiologicalRole
-
- setmIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- setMIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- setmIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setMIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setmIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setMIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setmIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameterPK
-
- setmIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setMIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setMifInteractorInteractorType(Set<MIFInteractorInteractorType>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setMifInteractorInteractorType(MIFInteractorInteractorType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifInteractorInteractorType(MIFInteractorInteractorType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifInteractorInteractorType(MIFInteractorInteractorType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifInteractorInteractorType(MIFInteractorInteractorType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifInteractorInteractorType(MIFInteractorInteractorType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifInteractorInteractorType(MIFInteractorInteractorType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setmIFOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setmIFOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifOtherAvailability(Map<MIFOtherAvailabilityPK, MIFOtherAvailability>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setmIFOtherAvailabilityPK(MIFOtherAvailabilityPK) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- setMIFOtherAvailabilityPK(MIFOtherAvailabilityPK) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- setMifOtherBibRef(Set<MIFOtherBibRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setmIFOtherBibRef(Set<MIFOtherBibRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setMifOtherBibref(MIFOtherBibRef) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifOtherBibref(MIFOtherBibRef) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifOtherBioSourceType(MIFOtherBioSourceType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setMifOtherBioSourceType(MIFOtherBioSourceType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setMifOtherBioSourceType(MIFOtherBioSourceType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setMifOtherBioSourceType(Set<MIFOtherBioSourceType>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifOtherBioSourceType(Set<MIFOtherBioSourceType>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setMifOtherBioSourceType(Set<MIFOtherBioSourceType>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifOtherBioSourceType(MIFOtherBioSourceType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setmIFOtherBioSourceTypeWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setMIFOtherBioSourceTypeWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setmIFOtherBioSourceTypeWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setMIFOtherBioSourceTypeWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setmIFOtherBioSourceTypeWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setMIFOtherBioSourceTypeWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setMifOtherConfidence(Set<MIFOtherConfidence>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifOtherConfidence(Set<MIFOtherConfidence>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifOtherConfidence(Set<MIFOtherConfidence>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifOtherConfidence(MIFOtherConfidence) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifOtherConfidence(MIFOtherConfidence) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- setMifOtherConfidence(MIFOtherConfidence) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifOtherConfidence(MIFOtherConfidence) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifOtherConfidence(MIFOtherConfidence) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifOtherConfidence(MIFOtherConfidence) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifOtherConfidence(MIFOtherConfidence) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifOtherExperimentRef(Map<MIFOtherExperimentRefPK, MIFOtherExperimentRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifOtherExperimentRef(Map<MIFOtherExperimentRefPK, MIFOtherExperimentRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- setMifOtherExperimentRef(Map<MIFOtherExperimentRefPK, MIFOtherExperimentRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- setMifOtherExperimentRef(Map<MIFOtherExperimentRefPK, MIFOtherExperimentRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setMifOtherExperimentRef(Map<MIFOtherExperimentRefPK, MIFOtherExperimentRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setMifOtherExperimentRef(Map<MIFOtherExperimentRefPK, MIFOtherExperimentRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifOtherExperimentRef(Map<MIFOtherExperimentRefPK, MIFOtherExperimentRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setmIFOtherExperimentRefPK(MIFOtherExperimentRefPK) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- setMIFOtherExperimentRefPK(MIFOtherExperimentRefPK) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- setmIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setmIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailabilityPK
-
- setmIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- setMIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- setmIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setMIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setmIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRefPK
-
- setmIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setmIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setmIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setmIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setmIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifOtherWIDExperimentRef(Map<MIFOtherExperimentRefPK, MIFOtherExperimentRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setmIFOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setMifOtherXRef(MIFOtherXRef) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setMifOtherXRefGO(MIFOtherXRefGO) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setMifOtherXRefPubMed(MIFOtherXRefPubMed) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setMifOtherXRefRefSeq(MIFOtherXRefRefSeq) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setMifOtherXRefUniprot(MIFOtherXRefUniprot) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setMifParticipantBiologicalRole(Set<MIFParticipantBiologicalRole>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifParticipantBiologicalRole(MIFParticipantBiologicalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifParticipantBiologicalRole(MIFParticipantBiologicalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifParticipantBiologicalRole(MIFParticipantBiologicalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifParticipantBiologicalRole(MIFParticipantBiologicalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifParticipantBiologicalRole(MIFParticipantBiologicalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifParticipantBiologicalRole(MIFParticipantBiologicalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifParticipantExperimentalInteractor(MIFParticipantExperimentalInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setMifParticipantExperimentalInteractor(MIFParticipantExperimentalInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- setMifParticipantExperimentalPreparation(Set<MIFParticipantExperimentalPreparation>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifParticipantExperimentalPreparation(MIFParticipantExperimentalPreparation) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifParticipantExperimentalPreparation(MIFParticipantExperimentalPreparation) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- setMifParticipantExperimentalPreparation(MIFParticipantExperimentalPreparation) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifParticipantExperimentalPreparation(MIFParticipantExperimentalPreparation) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifParticipantExperimentalPreparation(MIFParticipantExperimentalPreparation) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifParticipantExperimentalPreparation(MIFParticipantExperimentalPreparation) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifParticipantExperimentalPreparation(MIFParticipantExperimentalPreparation) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifParticipantExperimentalRole(Set<MIFParticipantExperimentalRole>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifParticipantExperimentalRole(MIFParticipantExperimentalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifParticipantExperimentalRole(MIFParticipantExperimentalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- setMifParticipantExperimentalRole(MIFParticipantExperimentalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifParticipantExperimentalRole(MIFParticipantExperimentalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifParticipantExperimentalRole(MIFParticipantExperimentalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifParticipantExperimentalRole(MIFParticipantExperimentalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifParticipantExperimentalRole(MIFParticipantExperimentalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifParticipantFeature(MIFParticipantFeature) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setMifParticipantFeature(MIFParticipantFeature) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setMifParticipantFeature(MIFParticipantFeature) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setMifParticipantFeature(Set<MIFParticipantFeature>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifParticipantFeature(MIFParticipantFeature) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifParticipantFeature(MIFParticipantFeature) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifParticipantFeature(MIFParticipantFeature) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- setMifParticipantFeature(MIFParticipantFeature) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifParticipantFeature(MIFParticipantFeature) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifParticipantFeature(MIFParticipantFeature) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifParticipantFeature(MIFParticipantFeature) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifParticipantFeature(MIFParticipantFeature) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setmIFParticipantFeatureWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setMIFParticipantFeatureWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setmIFParticipantFeatureWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setMIFParticipantFeatureWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setmIFParticipantFeatureWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setMIFParticipantFeatureWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setMifParticipantParameter(Map<MIFParticipantParameterPK, MIFParticipantParameter>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifParticipantParameter(Map<MIFParticipantParameterPK, MIFParticipantParameter>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMIFParticipantParameterPK(MIFParticipantParameterPK) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setmIFParticipantParameterPK(MIFParticipantParameterPK) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setMifParticipantPartIdentMeth(Set<MIFParticipantPartIdentMeth>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifParticipantPartIdentMeth(MIFParticipantPartIdentMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifParticipantPartIdentMeth(MIFParticipantPartIdentMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- setMifParticipantPartIdentMeth(MIFParticipantPartIdentMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifParticipantPartIdentMeth(MIFParticipantPartIdentMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifParticipantPartIdentMeth(MIFParticipantPartIdentMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifParticipantPartIdentMeth(MIFParticipantPartIdentMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifParticipantPartIdentMeth(MIFParticipantPartIdentMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMIMNumber(BigInteger) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setMIMNumber(BigInteger) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- setMinorVersion(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- setMissed_cleavages(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- setModAccession(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Modification
-
Sets the value of the modAccession property.
- setModDatabase(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Modification
-
Sets the value of the modDatabase property.
- setModDatabaseVersion(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Modification
-
Sets the value of the modDatabaseVersion property.
- setModDate(Date) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- setModelEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setModelEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setModelEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setModelled(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setModelLength(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setModelStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setModelStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setModelStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setModificationDate(Date) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setModified(Date) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setModified(String) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- setModLocation(BigInteger) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Modification
-
Sets the value of the modLocation property.
- setMolecularWeight(Double) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.TwoDimensionalIdentificationType
-
Sets the value of the molecularWeight property.
- setMolecule(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setMolType(String) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- setMonth(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setMouseCorr(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setMsLevel(int) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PrecursorType
-
Sets the value of the msLevel property.
- setMsLevel(int) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType.SpectrumInstrument
-
Sets the value of the msLevel property.
- setMsvLambda(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setMsvMu(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setMzArrayBinary(PeakListBinaryType) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumType
-
Sets the value of the mzArrayBinary property.
- setMzData(ExperimentType.MzData) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType
-
Sets the value of the mzData property.
- setMzRangeStart(Float) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType.SpectrumInstrument
-
Sets the value of the mzRangeStart property.
- setMzRangeStop(Float) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType.SpectrumInstrument
-
Sets the value of the mzRangeStop property.
- setName(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setName(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- setName(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- setName(String) - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Set the DataSet's name
- setName(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setName(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySubset
-
- setName(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthology
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTargetPK
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthology
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubTypePK
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Alt
-
Sets the value of the name property.
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Sets the value of the name property.
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Sets the value of the name property.
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Sets the value of the name property.
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Product
-
Sets the value of the name property.
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Reaction
-
Sets the value of the name property.
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Substrate
-
Sets the value of the name property.
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Subtype
-
Sets the value of the name property.
- setName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setName(String) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- setName(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setName(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- setName(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformNamePK
-
- setName(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- setName(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinNamePK
-
- setName(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyDivision
-
- setName(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- setName(String) - Method in class org.jbiowh.core.dbms.sql.SQLTable
-
Set the table's name
- setName(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Set the column's name
- setName(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Set the index's name
- setName(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexColumn
-
Set the column's name
- setName(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.DbEntry
-
Sets the value of the name property.
- setName(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Input
-
Sets the value of the name property.
- setName(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.CvParamType
-
Sets the value of the name property.
- setName(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PersonType
-
Sets the value of the name property.
- setName(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SoftwareType
-
Sets the value of the name property.
- setName(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.UserParamType
-
Sets the value of the name property.
- setNameAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setNameClass(TaxonomySynonymNameClass) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonym
-
- setNameClass(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonymNameClass
-
- setNameOfFile(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SourceFileType
-
Sets the value of the nameOfFile property.
- setNameSpace(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setNegative(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setNextscore(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- setNN(boolean) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Set the column as NN
- setNomenclatureStatus(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setNoSeqs(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- setNote(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- setNote(List<Note>) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- setNote(List<Note>) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Protein
-
- setNoteEvidence(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- setNumber(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setNumber(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- setNumber(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setNumber(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Sets the value of the number property.
- setNumber(int) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Set the column's number
- setNumber(int) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Set the index's number
- setNumber(int) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexColumn
-
Set the column's number
- setNumber(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Chromosome
-
Sets the value of the number property.
- setNumberArchs(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setNumberArchs(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- setNumberArchs(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setNumberMeta(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setNumberNcbi(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setNumberRegions(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- setNumberSequences(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setNumberShuffledHits(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setNumberSpecies(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setNumberSpecies(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- setNumberSpecies(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setNumberStructures(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setNumberStructures(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- setNumberStructures(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setNumDistinctRegions(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setNumFull(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setNumProteins(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setNumSeed(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setNumTotalRegions(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setObserved(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setOcc(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Alink
-
Sets the value of the occ property.
- setOcc(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Amod
-
Sets the value of the occ property.
- setOcc(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Avariant
-
Sets the value of the occ property.
- setOcc(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dmod
-
Sets the value of the occ property.
- setOcc(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dvariant
-
Sets the value of the occ property.
- setOcc(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rmod
-
Sets the value of the occ property.
- setOcc(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rvariant
-
Sets the value of the occ property.
- setOffset(Integer) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDataType
-
Sets the value of the offset property.
- setOmim(OMIM) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMAV
-
- setOmim(OMIM) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCD
-
- setOmim(OMIM) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCN
-
- setOmim(OMIM) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- setOmim(OMIM) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMED
-
- setOmim(OMIM) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMRF
-
- setOmim(OMIM) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMSA
-
- setOmim(OMIM) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTI
-
- setOmim(OMIM) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTX
-
- setOmim(Set<OMIM>) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setOmimAVs(Set<OMIMAV>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setOMIMCDPK(OMIMCDPK) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCD
-
- setOmimCDs(Map<OMIMCDPK, OMIMCD>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setOMIMCNPK(OMIMCNPK) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCN
-
- setOmimCNs(Map<OMIMCNPK, OMIMCN>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setOmimCS(OMIMCS) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCSData
-
- setOmimCSDatas(Set<OMIMCSData>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- setOmimCSs(Set<OMIMCS>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setOmimcsWid(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCSData
-
- setOMIMEDPK(OMIMEDPK) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMED
-
- setOmimEDs(Map<OMIMEDPK, OMIMED>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setoMIMGeneMaps(Set<OMIMGeneMap>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMethod
-
- setoMIMGeneMaps(Set<OMIMGeneMap>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- setOmimId(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setOmimId(BigInteger) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- setoMIMMethods(Set<OMIMMethod>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setoMIMMorbidMaps(Set<OMIMMorbidMap>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setOmimRFs(Set<OMIMRF>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setOmimSAs(Set<OMIMSA>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setOMIMTIPK(OMIMTIPK) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTI
-
- setOmimTIs(Map<OMIMTIPK, OMIMTI>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setOMIMTXPK(OMIMTXPK) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTX
-
- setOmimTXs(Map<OMIMTXPK, OMIMTX>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setOmimWid(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMAV
-
- setOmimWid(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCDPK
-
- setOmimWid(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCNPK
-
- setOmimWid(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- setOmimWid(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMEDPK
-
- setOmimWid(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMRF
-
- setOmimWid(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMSA
-
- setOmimWid(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTIPK
-
- setOmimWid(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTXPK
-
- setOntology(Set<Ontology>) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setOntology(Ontology) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeId
-
- setOntology(Ontology) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonym
-
- setOntology(Ontology) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsA
-
- setOntology(Ontology) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMID
-
- setOntology(Ontology) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelation
-
- setOntology(Ontology) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsider
-
- setOntology(Set<Ontology>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setOntologyAlternativeId(Map<OntologyAlternativeIdPK, OntologyAlternativeId>) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setOntologyAlternativeIdPK(OntologyAlternativeIdPK) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeId
-
- setOntologyhasOntologySynonym(Map<OntologyhasOntologySynonymPK, OntologyhasOntologySynonym>) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setOntologyhasOntologySynonym(Map<OntologyhasOntologySynonymPK, OntologyhasOntologySynonym>) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySynonym
-
- setOntologyhasOntologySynonymPK(OntologyhasOntologySynonymPK) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonym
-
- setOntologyIsA(Map<OntologyIsAPK, OntologyIsA>) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setOntologyIsAPK(OntologyIsAPK) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsA
-
- setOntologyPMID(Map<OntologyPMIDPK, OntologyPMID>) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setOntologyPMIDPK(OntologyPMIDPK) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMID
-
- setOntologyRelation(Map<OntologyRelationPK, OntologyRelation>) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setOntologyRelationPK(OntologyRelationPK) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelation
-
- setOntologySubset(Set<OntologySubset>) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setOntologySynonym(OntologySynonym) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonym
-
- setOntologySynonymWID(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonymPK
-
- setOntologyToConsider(Map<OntologyToConsiderPK, OntologyToConsider>) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setOntologyToConsiderPK(OntologyToConsiderPK) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsider
-
- setOntologyWID(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeIdPK
-
- setOntologyWID(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonymPK
-
- setOntologyWID(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsAPK
-
- setOntologyWID(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMIDPK
-
- setOntologyWID(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelationPK
-
- setOntologyWID(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsiderPK
-
- setOntologyXRef(Set<OntologyXRef>) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.BondType
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Drug
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.MultipleFieldXMLParser
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Partner
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Taxonomy
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.TwoFieldXMLParser
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.XMLIntermedParser
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.AttributeList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Availability
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.AvailabilityList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Bibref
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.BioSourceType
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Confidence
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ConfidenceList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.CVType
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.CVTypeList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Entry
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentalInteractor
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentalInteractorList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentDescription
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentRefList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Feature
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.FeatureList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.FeatureRange
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.FeatureRangeList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.HostOrganismList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InferredInteraction
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InferredInteractionList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Interaction
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InteractionList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Interactor
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InteractorList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Names
-
Set the open value
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.OpenCvType
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Parameter
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ParameterList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Participant
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ParticipantList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Source
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Xref
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protclust.parser.xml.Entry
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protclust.parser.xml.MemberType
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Comment
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Conflict
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.DBReference
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.EvidencedStringType
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Feature
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Gene
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.GeneLocation
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Interactant
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Isoform
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Keyword
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Location
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Organism
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.ProteinType
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Reference
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.SubCellularLocation
-
- setOrder(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexColumn
-
Set the column's order
- setOrderAdded(short) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferencesPK
-
- setOrderAdded(short) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferencesPK
-
- setOrderNumber(int) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumber
-
- setOrderNumber(int) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinName
-
- setOrg(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setOrg(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Sets the value of the org property.
- setOrganism(String) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- setOrganismsDiffer(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setOrientation(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- setOrientation(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- setOriginal(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- setOtherDesignations(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setOtherGeneInfoWID(long) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneGroupPK
-
- setOtherOntology(Ontology) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelation
-
- setOtherOntologyWID(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelationPK
-
- setOtherParams(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- setOtherParams(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- setOtherPfamAWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- setOtherWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- setOutput(PrintStream) - Method in class org.jbiowh.core.logger.VerbLogger
-
Set the PrintStream who will be used to print the messages
- setParentTaxId(long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setParticipant(int) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipantPK
-
- setParticipantType(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipant
-
- setPartner(int) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- setPartner(int) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- setPartner(int) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- setPartner(int) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- setPasswd(String) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Set the MySQL DB password
- setPasswd(String) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Set the MySQL DB password
- setPathToFile(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SourceFileType
-
Sets the value of the pathToFile property.
- setPdbEndIcode(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- setPdbId(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- setPdbInsertCode(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setPdbRes(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setPdbResEnd(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- setPdbResStart(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- setPdbSeqNumber(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setPdbStartIcode(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- setPeptide(List<Peptide>) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Protein
-
- setPercentageId(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamA(PfamAbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- setPfamA(PfamAbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- setPfamA(PfamAbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setPfamA(Set<PfamAbioWH>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- setPfamA(PfamAbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setPfamA(PfamAbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setPfamA(PfamAbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- setPfamA(Set<PfamAbioWH>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setPfamA(PfamAbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- setPfamA(PfamAbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamInterpro
-
- setPfamA(PfamAbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- setPfamA(PfamAbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- setPfamAacc(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamADatabaseLinkses(Set<PfamADatabaseLinks>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamAhasPfamLiteratureReferences(Map<PfamAhasPfamLiteratureReferencesPK, PfamAhasPfamLiteratureReferences>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamAhasPfamLiteratureReferences(Map<PfamAhasPfamLiteratureReferencesPK, PfamAhasPfamLiteratureReferences>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- setPfamAhasPfamLiteratureReferencesPK(PfamAhasPfamLiteratureReferencesPK) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- setPfamAid(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamAInsignificant(Set<PfamAbioWH>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setPfamANCBIRegs(Set<PfamANCBIReg>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamAPDBRegs(Set<PfamAPDBReg>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setPfamArchitectures(Set<PfamArchitecture>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamArchitectures(Set<PfamArchitecture>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setPfamARegFullInsignificant(PfamARegFullInsignificant) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- setPfamARegFullInsignificants(Set<PfamARegFullInsignificant>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamARegFullSignificant(PfamARegFullSignificant) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- setPfamARegFullSignificant(PfamARegFullSignificant) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- setPfamARegFullSignificants(Set<PfamARegFullSignificant>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamARegFullSignificantWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- setPfamARegSeed(Map<PfamARegSeedPK, PfamARegSeed>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamARegSeedPK(PfamARegSeedPK) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- setPfamASignificant(Set<PfamAbioWH>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setPfamAWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- setPfamAWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferencesPK
-
- setPfamAWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setPfamAWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setPfamAWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setPfamAWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeedPK
-
- setPfamAWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- setPfamAWID(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamInterpro
-
- setPfamAWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- setPfamAWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegionsPK
-
- setPfamB(PfamBbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- setPfamBacc(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- setPfamBid(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- setPfamBRegs(Set<PfamBReg>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- setPfamBWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- setPfamClanDatabaseLinkses(Set<PfamClanDatabaseLinks>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setPfamClans(PfamClans) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- setPfamClans(PfamClans) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- setPfamClanses(Set<PfamClans>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamClanses(Set<PfamClans>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- setPfamClanshasPfamLiteratureReferences(Map<PfamClanshasPfamLiteratureReferencesPK, PfamClanshasPfamLiteratureReferences>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setPfamClanshasPfamLiteratureReferences(Map<PfamClanshasPfamLiteratureReferencesPK, PfamClanshasPfamLiteratureReferences>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- setPfamClanshasPfamLiteratureReferencesPK(PfamClanshasPfamLiteratureReferencesPK) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- setPfamClansWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- setPfamClansWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferencesPK
-
- setPfamCompleteProteomes(PfamCompleteProteomes) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- setPfamCompleteProteomesWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegionsPK
-
- setPfamContextRegions(Set<PfamContextRegions>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamInterpros(Set<PfamInterpro>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamLiteratureReferences(PfamLiteratureReferences) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- setPfamLiteratureReferences(PfamLiteratureReferences) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- setPfamLiteratureReferencesWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferencesPK
-
- setPfamLiteratureReferencesWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferencesPK
-
- setPfamNestedLocationses(Set<PfamNestedLocations>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamPDB(PfamPDB) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setPfamPDBResidueDatas(Set<PfamPDBResidueData>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- setPfamPDBWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setPfamProteomeRegions(Map<PfamProteomeRegionsPK, PfamProteomeRegions>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamProteomeRegions(Map<PfamProteomeRegionsPK, PfamProteomeRegions>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setPfamProteomeRegionsPK(PfamProteomeRegionsPK) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- setPfamSeqhasProtein(PfamSeqhasProtein) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setPfamSeqhasProtein(PfamSeqhasProtein) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setPfamSeqhasProteinPK(PfamSeqhasProteinPK) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- setPfamSeqhasUniProtId(PfamSeqhasUniProtId) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- setPfamseqRes(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setPfamseqSeqNumber(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setPFrom(long) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- setPFrom(long) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- setpFrom(Long) - Method in class org.jbiowh.tools.gene.PTTData
-
- setPharmacology(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setPI(Double) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.TwoDimensionalIdentificationType
-
Sets the value of the pi property.
- setPid(Long) - Method in class org.jbiowh.tools.gene.PTTData
-
- setPK(boolean) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Set the column as PK
- setPLength(int) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- setPLength(int) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- setPmid(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- setPmid(long) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2PMIDPK
-
- setPmid(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMIDPK
-
- setPmid(Map<TaxonomyPMIDPK, TaxonomyPMID>) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setPmid(long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyPMIDPK
-
- setPosition(Integer) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- setPosition(Integer) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- setPosition(Integer) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- setPosition(Integer) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- setPosition(Integer) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- setPositionEnd(Integer) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setPositionStart(Integer) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setPositionStatus(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- setPost(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- setPre(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- setPrecision(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PeakListBinaryType.Data
-
Sets the value of the precision property.
- setPrecursor(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setPrecursor(String) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- setPrecursorList(SpectrumDescType.PrecursorList) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumDescType
-
Sets the value of the precursorList property.
- setPreviousId(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPreviousId(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setPreviousWID(long) - Method in class org.jbiowh.core.datasets.mainloader.entities.WidTable
-
Set the WidTable's previous Id
- setPrimaryRef(Boolean) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setPrimaryRef(Boolean) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setPrimaryRef(Boolean) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setPrimaryRef(Boolean) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setPrimaryRef(Boolean) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setProcessingMethod(ParamType) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.DataProcessingType
-
Sets the value of the processingMethod property.
- setProduct(String) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- setProduct(String) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankFeatures
-
- setProduct(String) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- setProduct(String) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- setProduct(String) - Method in class org.jbiowh.tools.gene.PTTData
-
- setProtein(Set<Protein>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setProtein(Set<Protein>) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- setProtein(Set<Protein>) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setProtein(Set<Protein>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setProtein(Set<Protein>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setProtein(Set<Protein>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setProtein(Set<Protein>) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumber
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCyc
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIP
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBank
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinEC
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntAct
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGG
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINT
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinName
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDB
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAM
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMID
-
- setProtein(List<Protein>) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- setProteinAccession(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- setProteinAccession(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Ensembl
-
- setProteinAccession(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneRefSeqUniprotPK
-
- setProteinAccessionNumber(Map<ProteinAccessionNumberPK, ProteinAccessionNumber>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinAccessionNumberPK(ProteinAccessionNumberPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumber
-
- setProteinAccessionVersion(Integer) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- setProteinAsCarriers(Set<Protein>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setProteinAsEnzyme(Set<Protein>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setProteinAsTransporters(Set<Protein>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setProteinBinding(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setProteinBioCyc(Map<ProteinBioCycPK, ProteinBioCyc>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinBioCycPK(ProteinBioCycPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCyc
-
- setProteinComment(Set<ProteinComment>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinComment(ProteinComment) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- setProteinComment(ProteinComment) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEvent
-
- setProteinComment(ProteinComment) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- setProteinComment(ProteinComment) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- setProteinComment(ProteinComment) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLink
-
- setProteinComment(ProteinComment) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- setProteinComment(ProteinComment) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- setProteinCommentConflict(Map<ProteinCommentConflictPK, ProteinCommentConflict>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setProteinCommentConflictPK(ProteinCommentConflictPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- setProteinCommentEvent(Map<ProteinCommentEventPK, ProteinCommentEvent>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setProteinCommentEventPK(ProteinCommentEventPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEvent
-
- setProteinCommentInteract(Set<ProteinCommentInteract>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setProteinCommentInteractPK(ProteinCommentInteractPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- setProteinCommentIsoform(Set<ProteinCommentIsoform>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setProteinCommentIsoform(ProteinCommentIsoform) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformId
-
- setProteinCommentIsoform(ProteinCommentIsoform) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformName
-
- setProteinCommentIsoformWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformIdPK
-
- setProteinCommentIsoformWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformNamePK
-
- setProteinCommentLink(Map<ProteinCommentLinkPK, ProteinCommentLink>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setProteinCommentLinkPK(ProteinCommentLinkPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLink
-
- setProteinCommentSubCellularLocation(Set<ProteinCommentSubCellularLocation>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setProteinCommentWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflictPK
-
- setProteinCommentWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEventPK
-
- setProteinCommentWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteractPK
-
- setProteinCommentWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- setProteinCommentWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLinkPK
-
- setProteinCommentWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- setProteinDBReference(Set<ProteinDBReference>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinDBReference(ProteinDBReference) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferenceProperty
-
- setProteinDBReferenceProperty(Map<ProteinDBReferencePropertyPK, ProteinDBReferenceProperty>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- setProteinDBReferencePropertyPK(ProteinDBReferencePropertyPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferenceProperty
-
- setProteinDBReferenceWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferencePropertyPK
-
- setProteinDIP(Map<ProteinDIPPK, ProteinDIP>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinDIPPK(ProteinDIPPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIP
-
- setProteinDrugBank(Map<ProteinDrugBankPK, ProteinDrugBank>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinDrugBankPK(ProteinDrugBankPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBank
-
- setProteinEC(Map<ProteinECPK, ProteinEC>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinECPK(ProteinECPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinEC
-
- setProteinFeature(Set<ProteinFeature>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinFeature(ProteinFeature) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeatureVariation
-
- setProteinFeatureVariation(Set<ProteinFeatureVariation>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- setProteinFeatureWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeatureVariation
-
- setProteinGi(long) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- setProteinGi(int) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- setProteinGi(Long) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- setProteinhasProteinKeyword(Map<ProteinhasProteinKeywordPK, ProteinhasProteinKeyword>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinhasProteinKeyword(Map<ProteinhasProteinKeywordPK, ProteinhasProteinKeyword>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKeyword
-
- setProteinhasProteinKeywordPK(ProteinhasProteinKeywordPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- setProteinId(String) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- setProteinId(String) - Method in class org.jbiowh.tools.gene.PTTData
-
- setProteinInsignificant(Set<Protein>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setProteinIntAct(Map<ProteinIntActPK, ProteinIntAct>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinIntActPK(ProteinIntActPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntAct
-
- setProteinIsoformId(Map<ProteinIsoformIdPK, ProteinIsoformId>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- setProteinIsoformIdPK(ProteinIsoformIdPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformId
-
- setProteinIsoformName(Map<ProteinIsoformNamePK, ProteinIsoformName>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- setProteinIsoformNamePK(ProteinIsoformNamePK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformName
-
- setProteinKEGG(Map<ProteinKEGGPK, ProteinKEGG>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinKEGGPK(ProteinKEGGPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGG
-
- setProteinKeyword(ProteinKeyword) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- setProteinKeywordWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeywordPK
-
- setProteinLongName(Set<ProteinLongName>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinMINT(Map<ProteinMINTPK, ProteinMINT>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinMINTPK(ProteinMINTPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINT
-
- setProteinName(Map<ProteinNamePK, ProteinName>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinNameDef(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- setProteinNamePK(ProteinNamePK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinName
-
- setProteinOtherLocation(Set<ProteinOtherLocation>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setProteinPDB(Map<ProteinPDBPK, ProteinPDB>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinPDBPK(ProteinPDBPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDB
-
- setProteinPFAM(Map<ProteinPFAMPK, ProteinPFAM>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinPFAMPK(ProteinPFAMPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAM
-
- setProteinPMID(Map<ProteinPMIDPK, ProteinPMID>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinPMIDPK(ProteinPMIDPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMID
-
- setProteinRefSeqPK(ProteinRefSeqPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeq
-
- setProteinSignificant(Set<Protein>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProteinPK
-
- setProteinWID(BigInteger) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumberPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCycPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIPPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBankPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinECPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeywordPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntActPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGGPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINTPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinNamePK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDBPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAMPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMIDPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeqPK
-
- setProtocol(ExperimentType.Protocol) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType
-
Sets the value of the protocol property.
- setProtocolName(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.Protocol
-
Sets the value of the protocolName property.
- setProtocolSteps(ExperimentType.Protocol.ProtocolSteps) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.Protocol
-
Sets the value of the protocolSteps property.
- setPTo(long) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- setPTo(long) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- setpTo(Long) - Method in class org.jbiowh.tools.gene.PTTData
-
- setPTTFile(String) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- setPTTFile(String) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- setpTTFile(String) - Method in class org.jbiowh.tools.gene.PTTData
-
- setQuery(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.DbEntry
-
Sets the value of the query property.
- setQuery(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.File
-
Sets the value of the query property.
- setRank(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setrClass(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- setRClass(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- setReaction(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- setReaction(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Sets the value of the reaction property.
- setRef(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- setReference(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setReference(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMRF
-
- setRefLine(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ReferenceType
-
Sets the value of the refLine property.
- setRefType(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setRefType(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setRefType(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setRefType(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setRefType(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setRefTypeAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setRefTypeAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setRefTypeAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setRefTypeAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setRefTypeAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setRegionId(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- setRelationship(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneGroupPK
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setReleaseDate(Date) - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Set the DataSet's release date
- setReleaseDate(Date) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setReleaseValue(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setRemark(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setRemark(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setRemark(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setResidueCoverage(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setResolution(BigDecimal) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- setResource(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- setResource(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- setResultPanel(ResultPanel) - Method in class org.jbiowh.gui.component.panel.result.ResultPanelFactory
-
Set the ResultPanel
- setRNANucleotideAccession(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- setrNANucleotideAccession(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Ensembl
-
- setRNANucleotideAccession(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Ensembl
-
- setRNANucleotideAccessionVersion(Integer) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- setRNANucleotideGi(BigInteger) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- setRoute(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- setRouteOfElimination(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setRt(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- setRunlinks(boolean) - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Set the runlinks flag.
- setSa(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMSA
-
- setSampleDescription(DescriptionType) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.AdminType
-
Sets the value of the sampleDescription property.
- setSampleName(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.AdminType
-
Sets the value of the sampleName property.
- setScope(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonymPK
-
- setScore(Double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- setScore(Double) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
Sets the value of the score property.
- setScrollerFor(JMenu) - Static method in class org.jbiowh.gui.component.popup.MenuScroller
-
Registers a menu to be scrolled with the default number of items to
display at a time and the default scrolling interval.
- setScrollerFor(JPopupMenu) - Static method in class org.jbiowh.gui.component.popup.MenuScroller
-
Registers a popup menu to be scrolled with the default number of items to
display at a time and the default scrolling interval.
- setScrollerFor(JMenu, int) - Static method in class org.jbiowh.gui.component.popup.MenuScroller
-
Registers a menu to be scrolled with the default number of items to
display at a time and the specified scrolling interval.
- setScrollerFor(JPopupMenu, int) - Static method in class org.jbiowh.gui.component.popup.MenuScroller
-
Registers a popup menu to be scrolled with the default number of items to
display at a time and the specified scrolling interval.
- setScrollerFor(JMenu, int, int) - Static method in class org.jbiowh.gui.component.popup.MenuScroller
-
Registers a menu to be scrolled, with the specified number of items to
display at a time and the specified scrolling interval.
- setScrollerFor(JPopupMenu, int, int) - Static method in class org.jbiowh.gui.component.popup.MenuScroller
-
Registers a popup menu to be scrolled, with the specified number of items
to display at a time and the specified scrolling interval.
- setScrollerFor(JMenu, int, int, int, int) - Static method in class org.jbiowh.gui.component.popup.MenuScroller
-
Registers a menu to be scrolled, with the specified number of items to
display in the scrolling region, the specified scrolling interval, and
the specified numbers of items fixed at the top and bottom of the menu.
- setScrollerFor(JPopupMenu, int, int, int, int) - Static method in class org.jbiowh.gui.component.popup.MenuScroller
-
Registers a popup menu to be scrolled, with the specified number of items
to display in the scrolling region, the specified scrolling interval, and
the specified numbers of items fixed at the top and bottom of the popup
menu.
- setSearchEngine(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
Sets the value of the searchEngine property.
- setSearchMethod(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setSecondary(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setSecondary(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setSecondary(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setSecondary(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setSecondary(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setSeedConsensus(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setSeedSource(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setSeq(String) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- setSeq(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setSeq(String) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- setSeq(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- setSeq(String) - Method in class org.jbiowh.core.utility.fileformats.fasta.FastaEntry
-
Set the sequence
- setSeqEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setSeqEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- setSeqEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setSeqEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setSeqEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- setSeqEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- setSeqEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- setSeqEnd(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- setSeqEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- setSeqID(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- setSeqLengh(int) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- setSeqLength(Integer) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setSeqLength(int) - Method in class org.jbiowh.core.utility.fileformats.fasta.FastaEntry
-
Set the length to format the fasta seq
- setSeqModified(Date) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setSeqRef(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- setSeqResource(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- setSeqStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setSeqStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- setSeqStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setSeqStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setSeqStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- setSeqStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- setSeqStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- setSeqStart(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- setSeqStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- setSeqType(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- setSequence(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setSequence(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- setSequence(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Peptide
-
Sets the value of the sequence property.
- setSequenceBitsScore(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setSequenceBitsScore(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setSequenceBitsScore(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setSequenceCoverage(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setSequenceCoverage(Double) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
Sets the value of the sequenceCoverage property.
- setSequenceEvalueScore(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setSequenceEvalueScore(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setSequenceEvalueScore(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setSequenceGA(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setSequenceNC(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setSequenceTC(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setSeqVersion(Short) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- setSeqVersion(Integer) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setSeqVersion(Integer) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- setSerial(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantBiologicalRole
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setShortLabel(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType
-
Sets the value of the shortLabel property.
- setSoftware(DataProcessingType.Software) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.DataProcessingType
-
Sets the value of the software property.
- setSource(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- setSource(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- setSource(String) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- setSource(ParamType) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.InstrumentDescriptionType
-
Sets the value of the source property.
- setSourceFile(SourceFileType) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.AdminType
-
Sets the value of the sourceFile property.
- setSourceId(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- setSpecies(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setSpectrumDesc(SpectrumDescType) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumType
-
Sets the value of the spectrumDesc property.
- setSpectrumInstrument(SpectrumSettingsType.SpectrumInstrument) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType
-
Sets the value of the spectrumInstrument property.
- setSpectrumList(ExperimentType.MzData.SpectrumList) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.MzData
-
Sets the value of the spectrumList property.
- setSpectrumRef(int) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PrecursorType
-
Sets the value of the spectrumRef property.
- setSpectrumReference(BigInteger) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
Sets the value of the spectrumReference property.
- setSpectrumReference(BigInteger) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Peptide
-
Sets the value of the spectrumReference property.
- setSpectrumSettings(SpectrumSettingsType) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumDescType
-
Sets the value of the spectrumSettings property.
- setSpectrumType(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType.AcqSpecification
-
Sets the value of the spectrumType property.
- setSpliceIsoform(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
Sets the value of the spliceIsoform property.
- setsQLTableViewPanel(SQLTableViewPanel) - Method in class org.jbiowh.gui.component.panel.result.ResultPanelFactory
-
Set the SQL Table view panel
- setStart(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- setStart(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
Sets the value of the start property.
- setStart(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dna
-
Sets the value of the start property.
- setStart(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Domain
-
Sets the value of the start property.
- setStart(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Exon
-
Sets the value of the start property.
- setStart(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Gene
-
Sets the value of the start property.
- setStart(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Intron
-
Sets the value of the start property.
- setStart(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Locus
-
Sets the value of the start property.
- setStart(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Peptide
-
Sets the value of the start property.
- setStart(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Promotor
-
Sets the value of the start property.
- setStart(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rdomain
-
Sets the value of the start property.
- setStart(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rna
-
Sets the value of the start property.
- setStart(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.StsDomain
-
Sets the value of the start property.
- setStart(BigInteger) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Peptide
-
Sets the value of the start property.
- setStartFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setStartPositionOnTheGenomicAccession(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- setStartShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aa
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aconflict
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Alink
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Amod
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Author
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Avariant
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Binary
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.BookTitle
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Cell
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Chromosome
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Clone
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.CommonName
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Copyright
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Da
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Data
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.DbEntry
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dmod
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dna
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Domain
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dstart
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dstop
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dvariant
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Editor
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Exon
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.File
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Form
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Gene
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Homolog
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Input
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Intron
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Journal
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Locus
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Name
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Note
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Organelle
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Organism
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Pages
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Particle
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Peptide
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Plasmid
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Promotor
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Protein
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ra
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rdomain
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Reference
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rmod
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rna
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rstart
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rstop
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rvariant
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Species
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.StsDomain
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Subunit
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Taxon
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Text
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Tissue
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Title
-
Sets the value of the state property.
- setState(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Volume
-
Sets the value of the state property.
- setStatus(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Accession
-
- setStatus(String) - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Set the DataSet's status
- setStatus(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- setStatus(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- setStatus(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- setStatus(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- setStatus(String) - Method in class org.jbiowh.core.datasets.protein.parser.xml.EvidencedStringType
-
- setStrand(String) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- setStrand(String) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- setStrength(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- setSubstructure(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- setSumI(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- setSumI(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Protein
-
- setSupDataArrayRef(int) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDescType
-
Sets the value of the supDataArrayRef property.
- setSupDataDesc(DescriptionType) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SupDescType
-
Sets the value of the supDataDesc property.
- setSymbol(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setSymbolFromNomenclature(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setSynonym(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSynonyms
-
- setSynonym(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySynonym
-
- setSynonym(Map<TaxonomySynonymPK, TaxonomySynonym>) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setSynonym(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonymPK
-
- setSynonyms(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfoSynonymsPK
-
- setSynthesisRef(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setSySName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- setTableDimensions() - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Set the table dimensions
- setTableDimensions() - Method in class org.jbiowh.gui.datasets.pathway.reaction.KEGGReactionListView
-
- setTag(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTXPK
-
- setTagname(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.DrugBankDefaultHandler
-
- setTagname(String) - Method in class org.jbiowh.core.datasets.ontology.parser.xml.GOOntologyDefaultHandler
-
- setTaxId(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setTaxID(long) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setTaxId(int) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- setTaxId(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setTaxId(long) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- setTaxId(long) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setTaxId(long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setTaxonomy(Taxonomy) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setTaxonomy(Taxonomy) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setTaxonomy(Taxonomy) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- setTaxonomy(Taxonomy) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GenePTT
-
- setTaxonomy(Taxonomy) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- setTaxonomy(Taxonomy) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setTaxonomy(Taxonomy) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setTaxonomy(Taxonomy) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- setTaxonomy(Taxonomy) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setTaxonomy(Taxonomy) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setTaxonomy(Taxonomy) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonym
-
- setTaxonomyDivisionWID(long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setTaxonomyGenCodeWID(long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setTaxonomyHost(Set<Taxonomy>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setTaxonomyMCGenCodeWID(long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setTaxonomyPMIDPK(TaxonomyPMIDPK) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyPMID
-
- setTaxonomySynonymNameClassWID(long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonymPK
-
- setTaxonomySynonymPK(TaxonomySynonymPK) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonym
-
- setTaxonomyWID(long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyPMIDPK
-
- setTaxonomyWID(long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonymPK
-
- setTempdir(String) - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Set the temporal directory use to parse the data source
- setTempdirectory(String) - Method in class org.jbiowh.core.utility.utils.ParseFiles
-
Set the temporal directory to create the files
- setTerm(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setTermAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameterPK
-
- setText(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setText(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyUnParseCitation
-
- setTextEvidence(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setTextStatus(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setThreshold(Double) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
Sets the value of the threshold property.
- setTi(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTIPK
-
- setTitle(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setTitle(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- setTitle(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- setTitle(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setTitle(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Sets the value of the title property.
- setTitle(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType
-
Sets the value of the title property.
- setTo(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aa
-
Sets the value of the to property.
- setTo(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Alink
-
Sets the value of the to property.
- setTo(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Amod
-
Sets the value of the to property.
- setToConsiderOntology(Ontology) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsider
-
- setToConsiderOntologyWID(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsiderPK
-
- setTotalAaCovered(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setTotalAaLength(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setTotalGenomeProteins(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setTotalSeqsCovered(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setToxicity(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setTreeOrder(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setTreeOrder(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setTreeOrder(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeedPK
-
- setTx(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setTx(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTX
-
- setType(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setType(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setType(String) - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Set the data source type
- setType(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelation
-
- setType(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- setType(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- setType(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- setType(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setType(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- setType(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- setType(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Sets the value of the type property.
- setType(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Sets the value of the type property.
- setType(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Reaction
-
Sets the value of the type property.
- setType(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Relation
-
Sets the value of the type property.
- setType(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setType(String) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntryProperty
-
- setType(String) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setType(String) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMemberProperty
-
- setType(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setType(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflictPK
-
- setType(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- setType(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- setType(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- setType(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- setType(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Set the column's type
- setType(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Set the index's type
- setType(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aa
-
Sets the value of the type property.
- setType(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aconflict
-
Sets the value of the type property.
- setType(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Alink
-
Sets the value of the type property.
- setType(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Amod
-
Sets the value of the type property.
- setType(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Avariant
-
Sets the value of the type property.
- setType(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Da
-
Sets the value of the type property.
- setType(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dmod
-
Sets the value of the type property.
- setType(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Domain
-
Sets the value of the type property.
- setType(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dvariant
-
Sets the value of the type property.
- setType(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- setType(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Input
-
Sets the value of the type property.
- setType(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Note
-
- setType(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ra
-
Sets the value of the type property.
- setType(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rmod
-
Sets the value of the type property.
- setType(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rvariant
-
Sets the value of the type property.
- setTypeAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setTypeExample(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- setTypeId(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- setTypeOfGene(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setTypes(Class[]) - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
Set the class types for each column
- setUid(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Protein
-
- setUncertainty(Float) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setUniGene(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2UniGenePK
-
- setUniProtId(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasUniProtId
-
- setUniProtKBProteinAccession(String) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneRefSeqUniprotPK
-
- setUniRefEntry(UniRefEntry) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntryProperty
-
- setUniRefEntry(UniRefEntry) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setUniRefEntry(Set<UniRefEntry>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setUniRefEntryProperty(Set<UniRefEntryProperty>) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- setUniRefEntryWID(long) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntryProperty
-
- setUniRefEntryWID(long) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setUniRefMember(Set<UniRefMember>) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- setUniRefMember(UniRefMember) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMemberProperty
-
- setUniRefMember(Set<UniRefMember>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setUniRefMemberProperty(Set<UniRefMemberProperty>) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setUniRefMemberWID(long) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMemberProperty
-
- setUniSTSID(long) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2STSPK
-
- setUnit(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- setUnit(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setUnitAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setUnparse(Set<TaxonomyUnParseCitation>) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setUpdated(Date) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setUpdated(Date) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setUpdated(Date) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setUpdated(Date) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- setUQ(boolean) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Set the column as UQ
- setUri(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLinkPK
-
- setUrl(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- setUrl(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- setUrl(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyUnParseCitation
-
- setUrl(String) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Set the MySQL DB URL
- setUrl(String) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Set the MySQL DB URL
- setUrl(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.DbEntry
-
Sets the value of the url property.
- setUrl(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.File
-
Sets the value of the url property.
- setUser(String) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Set the MySQL DB user
- setUser(String) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Set the MySQL DB user
- setVallue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Input
-
Sets the value of the vallue property.
- setValue(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- setValue(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- setValue(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubTypePK
-
- setValue(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Subtype
-
Sets the value of the value property.
- setValue(String) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntryProperty
-
- setValue(String) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMemberProperty
-
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aa
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Aconflict
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Alink
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Amod
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Author
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Avariant
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Binary
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.BookTitle
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Cell
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Chromosome
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Clone
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.CommonName
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Copyright
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Da
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Data
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.DbEntry
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dmod
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dna
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Domain
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dstart
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dstop
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Dvariant
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Editor
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Exon
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.File
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Form
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Gene
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Homolog
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Input
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Intron
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Journal
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Locus
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Name
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Note
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Organelle
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Organism
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Pages
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Particle
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Plasmid
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Promotor
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ra
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rdomain
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Reference
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rmod
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rna
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rstart
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rstop
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Rvariant
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Species
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.StsDomain
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Subunit
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Taxon
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Text
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Tissue
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Title
-
Sets the value of the value property.
- setvalue(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Volume
-
Sets the value of the value property.
- setValue(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.CvParamType
-
Sets the value of the value property.
- setValue(byte[]) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.PeakListBinaryType.Data
-
Sets the value of the value property.
- setValue(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.UserParamType
-
Sets the value of the value property.
- setValueAt(Object, int, int) - Method in class org.jbiowh.gui.component.table.model.ConstrainsTableModel
-
- setValueAt(Object, int, int) - Method in class org.jbiowh.gui.component.table.model.CreateTableColumnModel
-
- setValueAt(Object, int, int) - Method in class org.jbiowh.gui.component.table.model.CreateTableIndexModel
-
- setValueAt(Object, int, int) - Method in class org.jbiowh.gui.component.table.model.CreateTableModel
-
- setValueAt(Object, int, int) - Method in class org.jbiowh.gui.component.table.model.ExtendedListTableModel
-
- setValueAt(Object, int, int) - Method in class org.jbiowh.gui.component.table.model.ListTableModel
-
- setValueVal(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setVariation(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeatureVariation
-
- setVersion(Short) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setVersion(Short) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setVersion(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setVersion(String) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- setVersion(String) - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Set the DataSet's version
- setVersion(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- setVersion(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setVersion(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setVersion(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setVersion(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setVersion(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setVersion(Integer) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setVersion(String) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- setVersion(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.CvLookupType
-
Sets the value of the version property.
- setVersion(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentCollection
-
Sets the value of the version property.
- setVersion(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.MzData
-
Sets the value of the version property.
- setVersion(String) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.SoftwareType
-
Sets the value of the version property.
- setVisible() - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Set the panel visible
- setVisible() - Method in class org.jbiowh.gui.component.panel.ConstrainPanel
-
- setVisible() - Method in class org.jbiowh.gui.component.panel.HomePanel
-
- setVisible() - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Show the AbstractListView panel
- setVisible() - Method in class org.jbiowh.gui.component.panel.SearchPanel
-
- setVisible() - Method in class org.jbiowh.gui.component.panel.sql.SQLBrowsePanel
-
Shows the SQLBrowsePanel
- setVisible() - Method in class org.jbiowh.gui.component.panel.sql.SQLEditorPanel
-
Set the SQLEditorPanel visible
- setVisible() - Method in class org.jbiowh.gui.datasets.EntityParserViewProxy
-
Set the panel visible
- setVisible(Object, JComponent) - Method in class org.jbiowh.gui.datasets.ListViewProxy
-
Creates the ListView object to show the results
- setViterbiLambda(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setViterbiMu(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setVolumeOfDistribution(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMAV
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCSData
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMethod
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMRF
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMSA
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamMarkupKey
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqDisulphide
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAffectedOrganisms
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAHFSCodes
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankATCCodes
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankBrands
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersActions
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCategories
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesActions
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankFoodInteractions
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGroup
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSecondAccessionNumbers
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSynonyms
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsActions
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomy
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersActions
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- setWid(long) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2AccessionPK
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.Gene2Ensembl
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.gene.gene.jpa.entities.GeneInfo
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBank
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.gene.genebank.jpa.entities.GeneBankCDS
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.gene.genome.jpa.entities.GeneRNT
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Set the DataSet's Id
- setWid(Long) - Method in class org.jbiowh.core.datasets.mainloader.entities.WidTable
-
Set the WidTable's Id
- setWid(Long) - Method in class org.jbiowh.core.datasets.mainloader.WIDFactory
-
Set the WID value
- setWid(Long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySubset
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySynonym
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeClass
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanClass
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantBiologicalRole
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntryProperty
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMemberProperty
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setWid(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteractPK
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeatureVariation
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKeyword
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyDivision
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonymNameClass
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyUnParseCitation
-
- setWidth(Integer) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setWidth(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Sets the value of the width property.
- setWidth(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Input
-
Sets the value of the width property.
- setX(Integer) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setX(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Sets the value of the x property.
- setXCoordinate(double) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Point
-
Sets the value of the xCoordinate property.
- setXmlSpace(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Author
-
Sets the value of the xmlSpace property.
- setXmlSpace(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.BookTitle
-
Sets the value of the xmlSpace property.
- setXmlSpace(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.CommonName
-
Sets the value of the xmlSpace property.
- setXmlSpace(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Editor
-
Sets the value of the xmlSpace property.
- setXmlSpace(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Journal
-
Sets the value of the xmlSpace property.
- setXmlSpace(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Name
-
Sets the value of the xmlSpace property.
- setXmlSpace(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Note
-
Sets the value of the xmlSpace property.
- setXmlSpace(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Pages
-
Sets the value of the xmlSpace property.
- setXmlSpace(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Reference
-
Sets the value of the xmlSpace property.
- setXmlSpace(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Species
-
Sets the value of the xmlSpace property.
- setXmlSpace(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Taxon
-
Sets the value of the xmlSpace property.
- setXmlSpace(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Title
-
Sets the value of the xmlSpace property.
- setXmlSpace(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Volume
-
Sets the value of the xmlSpace property.
- setXsdfiledef(String) - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Set the Xsdfiledef parameter
- setY(Integer) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setY(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Sets the value of the y property.
- setY_ions(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- setY_score(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- setYCoordinate(double) - Method in class org.jbiowh.core.utility.fileformats.pride.xml.Point
-
Sets the value of the yCoordinate property.
- setYear(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setZ(String) - Method in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- shortLabel - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType
-
- showPopop(MouseEvent) - Method in class org.jbiowh.gui.component.panel.result.ResultPanel
-
- showPopop(MouseEvent) - Method in class org.jbiowh.gui.component.panel.sql.SQLTableViewPanel
-
- showPopop(MouseEvent) - Method in class org.jbiowh.gui.component.panel.TreeViewPanel
-
Show the popup in the tree view
- SimpleGel - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
The SimpleGel element (complex) extends the GelType element to provide a concrete
implementation of gel, holding a reference to a gel image (if available).
- SimpleGel() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.SimpleGel
-
- SimpleReference - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
This is a concrete implementation of the abstract ReferenceType element and provides a
very simple implementation of a link to any literature citations.
- SimpleReference() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.SimpleReference
-
- size() - Method in class org.jbiowh.core.datasets.gene.genome.utils.Chromosome
-
Return the amount of genes on the chromosome
- software - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.DataProcessingType
-
- SoftwareType - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
Software information (the software that produced the peak list).
- SoftwareType() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.SoftwareType
-
- SOURCE - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PropertyTypeTags
-
- Source - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class handled the XML Source Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Source() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.Source
-
This constructor initialize the WH file manager and the WH DataSet
manager
- source - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.InstrumentDescriptionType
-
- sourceFile - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.AdminType
-
- SourceFileType - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
Description of the source file, including location and type.
- SourceFileType() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.SourceFileType
-
- SourceTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class storage the XML Source Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- SourceTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.SourceTags
-
- Species - Class in org.jbiowh.core.utility.fileformats.bioml.xml
-
- Species() - Constructor for class org.jbiowh.core.utility.fileformats.bioml.xml.Species
-
- spectrum - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.MzData.SpectrumList
-
- spectrumDesc - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumType
-
- SpectrumDescType - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
Description of the process of performing an acquisition
- SpectrumDescType() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumDescType
-
- SpectrumDescType.PrecursorList - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
Java class for anonymous complex type.
- SpectrumDescType.PrecursorList() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumDescType.PrecursorList
-
- spectrumInstrument - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType
-
- spectrumList - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.MzData
-
- spectrumRef - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.PrecursorType
-
- spectrumReference - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
- spectrumReference - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.Peptide
-
- spectrumSettings - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumDescType
-
- SpectrumSettingsType - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
Description of the parameters for the mass spectrometer for a given acquisition (or list
of)
- SpectrumSettingsType() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType
-
- SpectrumSettingsType.AcqSpecification - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
Java class for anonymous complex type.
- SpectrumSettingsType.AcqSpecification() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType.AcqSpecification
-
- SpectrumSettingsType.AcqSpecification.Acquisition - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
Java class for anonymous complex type.
- SpectrumSettingsType.AcqSpecification.Acquisition() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType.AcqSpecification.Acquisition
-
- SpectrumSettingsType.SpectrumInstrument - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
Java class for anonymous complex type.
- SpectrumSettingsType.SpectrumInstrument() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType.SpectrumInstrument
-
- spectrumType - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumSettingsType.AcqSpecification
-
- SpectrumType - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
The structure tha captures the generation of a peak list (including
the underlying acquisitions)
- SpectrumType() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumType
-
- spliceIsoform - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.IdentificationType
-
- split(String, long, String) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.utility.DrugBankSplitReference
-
This method split the DrugBank reference and print it on the relational
table
- splitFastaFilePerTaxGroup() - Method in class org.jbiowh.tools.genebank.FindGeneBankFlat
-
- splitFastaFilePerTaxGroup() - Method in class org.jbiowh.tools.genebank.FindGeneBankTax
-
- splitField(PrintWriter, String, String, String, String) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
This metho split the field2header field returned on the sql sentence into
a string array repeating the field1header
- splitField(PrintWriter, String, String, String, String, String) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
This metho split the field2header field returned on the sql sentence into
a string array repeating the field1header.
- splitField(PrintWriter, String, String, String, String) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
This metho split the field2header field returned on the sql sentence into
a string array repeating the field1header
- splitField(PrintWriter, String, String, String, String, String) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
This metho split the field2header field returned on the sql sentence into
a string array repeating the field1header.
- splitFilePerTaxGroup() - Method in class org.jbiowh.tools.genebank.FindGeneBankTax
-
- SQLBrowsePanel - Class in org.jbiowh.gui.component.panel.sql
-
This JPanel is
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-08 15:29:16 +0200 (Mon, 08 Oct 2012) $
$LastChangedRevision: 273 $
- SQLBrowsePanel(String, List, JComponent) - Constructor for class org.jbiowh.gui.component.panel.sql.SQLBrowsePanel
-
Creates new form SQLBrowsePanel
- SQLConstrainException - Exception in org.jbiowh.core.dbms.sql.exception
-
This Class is an exception for the SQL Constrains between two non connected
DataSets
- SQLConstrainException(String, Throwable) - Constructor for exception org.jbiowh.core.dbms.sql.exception.SQLConstrainException
-
Constructs a new SQLConstrain exception with the specified detail message.
- SQLConstrainException(String) - Constructor for exception org.jbiowh.core.dbms.sql.exception.SQLConstrainException
-
Create the SQLConstrainException
- SQLDocumentFilter - Class in org.jbiowh.gui.component.panel.sql.syntax
-
This Class is
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- SQLDocumentFilter(WHDBMSFactory) - Constructor for class org.jbiowh.gui.component.panel.sql.syntax.SQLDocumentFilter
-
- SQLEditorPanel - Class in org.jbiowh.gui.component.panel.sql
-
This JPanel is
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-08-31 15:46:36 +0200
(Fri, 31 Aug 2012) $ $LastChangedRevision: 396 $
- SQLEditorPanel(JComponent, WHDBMSFactory) - Constructor for class org.jbiowh.gui.component.panel.sql.SQLEditorPanel
-
Creates new form SQLEditorPanel
- SQLEditorPanel.MyUndoableEditListener - Class in org.jbiowh.gui.component.panel.sql
-
The Document listener for the Undo and Redo process
- SQLEditorPanel.MyUndoableEditListener() - Constructor for class org.jbiowh.gui.component.panel.sql.SQLEditorPanel.MyUndoableEditListener
-
- SQLEditorPanel.RedoAction - Class in org.jbiowh.gui.component.panel.sql
-
The RedoAction Class definition
- SQLEditorPanel.RedoAction() - Constructor for class org.jbiowh.gui.component.panel.sql.SQLEditorPanel.RedoAction
-
Create the Redo Action
- SQLEditorPanel.UndoAction - Class in org.jbiowh.gui.component.panel.sql
-
The UndoAction Class definition
- SQLEditorPanel.UndoAction() - Constructor for class org.jbiowh.gui.component.panel.sql.SQLEditorPanel.UndoAction
-
Create the Undo Action
- SQLFunctionsAndOperators - Class in org.jbiowh.gui.component.panel.sql.syntax
-
This Class handled the SQL Arithmetic Operators
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- SQLReservedWords - Class in org.jbiowh.gui.component.panel.sql.syntax
-
This Class handled the SQL reserved words
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- SQLSpecialChar - Class in org.jbiowh.gui.component.panel.sql.syntax
-
This Class handled the SQL special characters parenthesis
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- SQLTable - Class in org.jbiowh.core.dbms.sql
-
This Class is the SQL Table
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- SQLTable() - Constructor for class org.jbiowh.core.dbms.sql.SQLTable
-
Creates a SQL Table object
- SQLTable(String) - Constructor for class org.jbiowh.core.dbms.sql.SQLTable
-
Creates a SQL Table object
- SQLTable(String, String) - Constructor for class org.jbiowh.core.dbms.sql.SQLTable
-
Creates a SQL Table object
- SQLTable(String, String, SQLTableColumns) - Constructor for class org.jbiowh.core.dbms.sql.SQLTable
-
Creates a SQL Table object
- SQLTable(String, String, SQLTableColumns, SQLTableIndexes) - Constructor for class org.jbiowh.core.dbms.sql.SQLTable
-
Creates a SQL Table object
- SQLTableColumn - Class in org.jbiowh.core.dbms.sql
-
This Class is the SQL Table Column
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- SQLTableColumn(String, int, String, boolean, boolean, boolean, boolean, Object) - Constructor for class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Creates a table column
- SQLTableColumns - Class in org.jbiowh.core.dbms.sql
-
This Class is the columns handler in a SQLTable
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- SQLTableColumns() - Constructor for class org.jbiowh.core.dbms.sql.SQLTableColumns
-
Creates the columns handler in a SQLTable
- SQLTableException - Exception in org.jbiowh.gui.sqltables.exception
-
This Class is the Exception to be use during the table creating process
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- SQLTableException(String) - Constructor for exception org.jbiowh.gui.sqltables.exception.SQLTableException
-
- SQLTableIndex - Class in org.jbiowh.core.dbms.sql
-
This Class is the SQL Table Index
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- SQLTableIndex(String, int, String) - Constructor for class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Create a SQL index for a table
- SQLTableIndex(String, int, String, ConcurrentHashMap<String, SQLTableIndexColumn>) - Constructor for class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Create a SQL index for a table
- SQLTableIndexColumn - Class in org.jbiowh.core.dbms.sql
-
This Class is the SQLtable index colum
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- SQLTableIndexColumn(String, int, String, String) - Constructor for class org.jbiowh.core.dbms.sql.SQLTableIndexColumn
-
Create the SQL Table Index Column
- SQLTableIndexes - Class in org.jbiowh.core.dbms.sql
-
This Class handled the indexes in a table
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- SQLTableIndexes() - Constructor for class org.jbiowh.core.dbms.sql.SQLTableIndexes
-
Creates the indexes handler in a SQLTable
- SQLTableViewPanel - Class in org.jbiowh.gui.component.panel.sql
-
This Class is the SQL Table View panel
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- SQLTableViewPanel(JTabbedPane) - Constructor for class org.jbiowh.gui.component.panel.sql.SQLTableViewPanel
-
- start - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- start - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Dna
-
- start - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Domain
-
- start - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Exon
-
- start - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Gene
-
- start - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Intron
-
- start - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Locus
-
- start - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Peptide
-
- start - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Promotor
-
- start - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Rdomain
-
- start - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Rna
-
- start - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.StsDomain
-
- start - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.Peptide
-
- start(Collection, String) - Method in class org.jbiowh.core.utility.utils.ParseFiles
-
Start the Parser files factory setting the temporal directory and the
list of files names
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.BondType
-
This is the method for the Header on GO
- startElement(String, int, Attributes) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Drug
-
This is the method for the Header on GO
- startElement(String, String, String, Attributes) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.DrugBankDefaultHandler
-
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.MultipleFieldXMLParser
-
This is the method for the Header on GO
- startElement(String, int, Attributes) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Partner
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Taxonomy
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.TwoFieldXMLParser
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.XMLIntermedParser
-
This is the method for the Header on GO
- startElement(String, String, String, Attributes) - Method in class org.jbiowh.core.datasets.ontology.parser.xml.GOOntologyDefaultHandler
-
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.AttributeList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Availability
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.AvailabilityList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Bibref
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.BioSourceType
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Confidence
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ConfidenceList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.CVType
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.CVTypeList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Entry
-
This is the startElement method
- startElement(String, int, Attributes) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.EntrySet
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentalInteractor
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentalInteractorList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentDescription
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentRefList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Feature
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.FeatureList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.FeatureRange
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.FeatureRangeList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.HostOrganismList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InferredInteraction
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InferredInteractionList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Interaction
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InteractionList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Interactor
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InteractorList
-
This is the startElement method
- startElement(String, String, String, Attributes) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.MIF25DefaultHandler
-
- startElement(String, int, Attributes) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Names
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.OpenCvType
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Parameter
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ParameterList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Participant
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ParticipantList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Source
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Xref
-
This is the startElement method
- startElement(String, int, Attributes) - Method in class org.jbiowh.core.datasets.protclust.parser.xml.Entry
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protclust.parser.xml.MemberType
-
This is the method for the Header on GO
- startElement(String, String, String, Attributes) - Method in class org.jbiowh.core.datasets.protclust.parser.xml.UniRefDefaultHandler
-
- startElement(String, int, Attributes) - Method in class org.jbiowh.core.datasets.protclust.parser.xml.UniRefXML
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Comment
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Conflict
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.DBReference
-
This is the method for the Header on GO
- startElement(String, int, Attributes) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Entry
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Feature
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Gene
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.GeneLocation
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Interactant
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Isoform
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Keyword
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Location
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Organism
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.ProteinType
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Reference
-
This is the method for the Header on GO
- startElement(String, int, Attributes) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.SubCellularLocation
-
This is the method for the Header on GO
- startElement(String, String, String, Attributes) - Method in class org.jbiowh.core.datasets.protein.parser.xml.UniprotDefaultHandler
-
- startElementGOHeader(String, int) - Method in class org.jbiowh.core.datasets.ontology.parser.xml.GOHeader
-
This is the method for the Header on GO
- startElementGOTerm(String, int, Attributes) - Method in class org.jbiowh.core.datasets.ontology.parser.xml.GOTerm
-
This is the method for the Header on GO
- startTransfer(WHDBMSFactory, Object) - Method in class org.jbiowh.core.dbms.transfer.TransferData
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Aa
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Aconflict
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Alink
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Amod
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Author
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Avariant
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Binary
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.BookTitle
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Cell
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Chromosome
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Clone
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.CommonName
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Copyright
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Da
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Data
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.DbEntry
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Ddomain
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Dmod
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Dna
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Domain
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Dstart
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Dstop
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Dvariant
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Editor
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Exon
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.File
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Form
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Gene
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Homolog
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Input
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Intron
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Journal
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Locus
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Name
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Note
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Organelle
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Organism
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Pages
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Particle
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Peptide
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Plasmid
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Promotor
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Protein
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Ra
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Rdomain
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Reference
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Rmod
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Rna
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Rstart
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Rstop
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Rvariant
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Species
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.StsDomain
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Subunit
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Taxon
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Text
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Tissue
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Title
-
- state - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Volume
-
- stepDescription - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.ExperimentType.Protocol.ProtocolSteps
-
- STRAND - Variable in class org.jbiowh.core.datasets.gene.genome.search.SearchGenePTT
-
- STRENGTH - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DosagesTags
-
- string - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.SupDataType
-
- STRUCTURE - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- StsDomain - Class in org.jbiowh.core.utility.fileformats.bioml.xml
-
- StsDomain() - Constructor for class org.jbiowh.core.utility.fileformats.bioml.xml.StsDomain
-
- SubCellularLocation - Class in org.jbiowh.core.datasets.protein.parser.xml
-
This Class handled the XML SubCellularLocation tags on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- SubCellularLocation() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.SubCellularLocation
-
This constructor initialize the WH file manager and the WH DataSet
manager
- SubCellularLocationTags - Class in org.jbiowh.core.datasets.protein.parser.xml.tags
-
This Class storage the XML SubCellularLocation tags on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- SubCellularLocationTags() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.tags.SubCellularLocationTags
-
- substrate - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Reaction
-
- Substrate - Class in org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml
-
This is the Substrate XML parser from JAXB for KGML file format
- Substrate() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Substrate
-
- SUBSTRATE - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- SUBSTRUCTURE - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.TaxonomyTags
-
- SUBSTRUCTURES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.TaxonomyTags
-
- subtype - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Relation
-
- Subtype - Class in org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml
-
This is the Subtype XML parser from JAXB for KGML file format
- Subtype() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Subtype
-
- Subunit - Class in org.jbiowh.core.utility.fileformats.bioml.xml
-
- Subunit() - Constructor for class org.jbiowh.core.utility.fileformats.bioml.xml.Subunit
-
- sumI - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Group
-
- sumI - Variable in class org.jbiowh.core.utility.fileformats.bioml.xml.Protein
-
- supDataArrayBinaryOrSupDataArray - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumType
-
- supDataArrayRef - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.SupDescType
-
- SupDataBinaryType - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
Extension of binary data group for supplemental data
- SupDataBinaryType() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.SupDataBinaryType
-
- supDataDesc - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.SupDescType
-
- SupDataType - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
Data type for additional data vectors (beyond m/z and intensity).
- SupDataType() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.SupDataType
-
- supDesc - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.SpectrumType
-
- SupDescType - Class in org.jbiowh.core.utility.fileformats.pride.xml
-
Description of a supplemental data array
- SupDescType() - Constructor for class org.jbiowh.core.utility.fileformats.pride.xml.SupDescType
-
- supSourceFile - Variable in class org.jbiowh.core.utility.fileformats.pride.xml.SupDescType
-
- SYMBOL - Variable in class org.jbiowh.core.datasets.gene.gene.search.SearchGeneInfo
-
- SYNONYM - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.SynonymsTags
-
- SYNONYM - Variable in class org.jbiowh.core.datasets.drug.drugbank.search.SearchDrugBank
-
- SYNONYM - Variable in class org.jbiowh.core.datasets.gene.gene.search.SearchGeneInfo
-
- SYNONYM - Variable in class org.jbiowh.core.datasets.ontology.search.SearchOntology
-
- SYNONYM - Variable in class org.jbiowh.core.datasets.taxonomy.search.SearchTaxonomy
-
- SYNONYMS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.SynonymsTags
-
- SynonymsTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the Synonyms XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- SYNTHESISREFERENCE - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugTags
-
- SYSNAME - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- SYSNAME - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-